View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_41 (Length: 223)
Name: NF8631_low_41
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 2898185 - 2898399
Alignment:
| Q |
1 |
aaagttgagaccaggcatccaattaggctgtattcccggtacatagataaagtttacgtgttatttcgtttcacacatgaggaggctcgggatctcattc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2898185 |
aaagttgagaccaggcatccaattaggctgcattcccggtacatagataaagtttatatgttatttcgtttcacacatgaggaggctcgggatctcattc |
2898284 |
T |
|
| Q |
101 |
agaaatatctcactgaacaccctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggccaagagatgcaagaatgaggctcatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2898285 |
agaaatatctcactgaacaccctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggccaagagatgcaagaatgaggctcatgaa |
2898384 |
T |
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| Q |
201 |
gcatgatgtccatct |
215 |
Q |
| |
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|||||||||| |||| |
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| T |
2898385 |
gcatgatgtcaatct |
2898399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 44781545 - 44781338
Alignment:
| Q |
1 |
aaagttgagaccaggcatccaattaggctgtattcccggtacatagataaagtttacgtgttatttcgtttcacacatgaggaggctcgggatctcattc |
100 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| || |||||||| |||| || | |||||||| ||||||||||||||||| ||||||||||||| |
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| T |
44781545 |
aaagtggagaccaggcatccaattcggctgtattctcgatacatagaccgagttcacatcttatttcgcttcacacatgaggaggcccgggatctcattc |
44781446 |
T |
|
| Q |
101 |
agaaatatctcactgaacaccctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggccaagagatgcaagaatgaggctcatgaa |
200 |
Q |
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|| ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44781445 |
agcgatatctcaccgagcatcctgatcctaacaatgagaacatggtggggtacaataataagaagtgttggccaagagatgcaagaatgaggctcatgaa |
44781346 |
T |
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| Q |
201 |
gcatgatg |
208 |
Q |
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|||||||| |
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| T |
44781345 |
gcatgatg |
44781338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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