View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8631_low_44 (Length: 219)
Name: NF8631_low_44
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_44 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 9611661 - 9611869
Alignment:
| Q |
1 |
aaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9611661 |
aaataaataaggtgagagaggatccccttgacggagtccgcgtcctggcacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtc |
9611760 |
T |
|
| Q |
101 |
tcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9611761 |
tcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgctttac |
9611860 |
T |
|
| Q |
201 |
tgatgtcca |
209 |
Q |
| |
|
| ||||||| |
|
|
| T |
9611861 |
taatgtcca |
9611869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 27454647 - 27454840
Alignment:
| Q |
5 |
aaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaa |
104 |
Q |
| |
|
||||||||||| || ||||| || ||||| ||||| | ||||| |||||||||||||| | |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
27454647 |
aaataaggtgaaaggggatcaccctgacgaaggccacaccctggtacaataggacccaccgatgctccattaaccaagaccgagtaatcaaccgtctcaa |
27454746 |
T |
|
| Q |
105 |
cacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgcttt |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || ||||||||||||||||| || |||||||| ||||||||||||| ||| ||||| ||||| |
|
|
| T |
27454747 |
cacaaagcataatccagttaacccatcgagatgagaaacccatttgaatcatgatatctcgtagataatcccaatctagtctatcataagcttt |
27454840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 14492754 - 14492881
Alignment:
| Q |
74 |
ttaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaat |
173 |
Q |
| |
|
||||||||||| || || || | |||||||||||| | |||||||||||| || || ||||| |||| |||||||| ||||||| || | | ||| | |
|
|
| T |
14492754 |
ttaaccaaaacggaatagtctattgtctcaacacataacataatccaactgacacaacgagattaaaatcccatttgcatcataacatcacacaagtatt |
14492853 |
T |
|
| Q |
174 |
cccaatctaatctgtcatatgctttact |
201 |
Q |
| |
|
|||| ||||| |||||||||| |||||| |
|
|
| T |
14492854 |
cccagtctaacctgtcatatggtttact |
14492881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 26431352 - 26431560
Alignment:
| Q |
1 |
aaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26431352 |
aaataaataaggtgagagaggatccccttgacggagtccgcgtcctggcacaataggacccactgaagctccattaaccaaaaccgagtaatcaaccgtc |
26431451 |
T |
|
| Q |
101 |
tcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26431452 |
tcaacacaaagcataatccaactaacccatcgagatgaaaaactcatttgaatcatgatttcttgtaggtaatcccaatctaatctgtcatatgctttac |
26431551 |
T |
|
| Q |
201 |
tgatgtcca |
209 |
Q |
| |
|
| ||||||| |
|
|
| T |
26431552 |
taatgtcca |
26431560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 48444646 - 48444439
Alignment:
| Q |
2 |
aataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtct |
101 |
Q |
| |
|
|||||||||||||| || ||||| || ||||| |||||||| ||||| ||||||||| |||||| |||||||||||||| || || || ||||| |||| |
|
|
| T |
48444646 |
aataaataaggtgaaaggggatcaccctgacgaaggccgcgccctggtacaataggatccactagtgctccattaaccaagactgaatagtcaaccgtct |
48444547 |
T |
|
| Q |
102 |
caacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
201 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| || |||||||||| |||||| || |||||||| || |||||||||| ||| ||||| |||||||| |
|
|
| T |
48444546 |
caacacaaagcataatccagctaacccaacgagatgagaaacccatttaaatcatgatatctcgtagatagtcccaatctagtctatcataagctttact |
48444447 |
T |
|
| Q |
202 |
gatgtcca |
209 |
Q |
| |
|
||||||| |
|
|
| T |
48444446 |
aatgtcca |
48444439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 2542642 - 2542443
Alignment:
| Q |
2 |
aataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtct |
101 |
Q |
| |
|
|||| |||||||||||| ||||| || |||| ||||| || | |||||||||||||||||| |||||||| ||||| |||||||| ||||| || | |
|
|
| T |
2542642 |
aatagataaggtgagaggggatcaccctgacaaaggccacgccttggcacaataggacccaccgttgctccattgaccaagaccgagtagtcaaccgttt |
2542543 |
T |
|
| Q |
102 |
caacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
201 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || || ||||||||||||||||| || ||||| ||| |||||||||||||| | ||||| |||||||| |
|
|
| T |
2542542 |
caacgtaaagcgtaatccaactaacccattcggaggagaaacccatttgaatcatgatatctcgaaggaaatcccaatctaatatatcataagctttact |
2542443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 13962965 - 13962881
Alignment:
| Q |
5 |
aaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagt |
89 |
Q |
| |
|
||||||||||| || ||||| || | ||| |||||||| ||||||||||||||||||| | | |||||||||||||| ||||||| |
|
|
| T |
13962965 |
aaataaggtgaaaggggatcaccctaacgaaggccgcgccctggcacaataggacccattgatgctccattaaccaagaccgagt |
13962881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 36482996 - 36483064
Alignment:
| Q |
88 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcat |
156 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||| |||||||| |
|
|
| T |
36482996 |
gtaatcaactgtctcaacacatagcataatccattgaacccatctagtagaaaaacccatctgaatcat |
36483064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32955418 - 32955218
Alignment:
| Q |
1 |
aaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||| ||| |
|
|
| T |
32955418 |
aaataaataaggtgagagaggatccccttgacggagaccgcgtcctagcacaataggacccactgatgctccattaaccaacaccgagtaatcaaccgtc |
32955319 |
T |
|
| Q |
101 |
tcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32955318 |
tcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgctttac |
32955219 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
32955218 |
t |
32955218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 7606169 - 7605966
Alignment:
| Q |
6 |
aataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaac |
105 |
Q |
| |
|
|||||||||| || ||||| || ||||| ||| |||| ||||| |||||||||||| | | |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7606169 |
aataaggtgaaaggggatcaccctgacgaaggtcgcgccctggtacaataggaccctttgatgctccattaaccaagaccgagtaatcaaccgtctcaac |
7606070 |
T |
|
| Q |
106 |
acaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttactgatg |
205 |
Q |
| |
|
|||||||||||| || |||||||||||||| || ||||||||||||||||| || |||||||| ||||||||||||| ||| ||||| |||||||| ||| |
|
|
| T |
7606069 |
acaaagcataattcagctaacccatcgagatgagaaacccatttgaatcatgatatctcgtagataatcccaatctagtctatcataagctttactaatg |
7605970 |
T |
|
| Q |
206 |
tcca |
209 |
Q |
| |
|
|||| |
|
|
| T |
7605969 |
tcca |
7605966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 328122 - 328051
Alignment:
| Q |
88 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataat |
159 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |||||||| || |||||||||||| ||||||||||| |
|
|
| T |
328122 |
gtaatcaactgtctcaacgcatagcataatccactgaacccatctagcagaaaaacccatctgaatcataat |
328051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3964453 - 3964661
Alignment:
| Q |
1 |
aaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | | |||||||||||||| || ||||||||||| ||| |
|
|
| T |
3964453 |
aaataaataaggtgagagaggatccccttgacggagtccgcgtccttgcacaataggacccattgatgctccattaaccaatactgagtaatcaaccgtc |
3964552 |
T |
|
| Q |
101 |
tcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3964553 |
tcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgctttac |
3964652 |
T |
|
| Q |
201 |
tgatgtcca |
209 |
Q |
| |
|
| ||||||| |
|
|
| T |
3964653 |
taatgtcca |
3964661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 24018522 - 24018433
Alignment:
| Q |
70 |
tccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataat |
159 |
Q |
| |
|
||||||||||| |||| | || || || ||||||||||| | ||||||| |||||||||| | ||| ||||| ||| |||||| |||||| |
|
|
| T |
24018522 |
tccattaaccagaacctaatagtctaccgtctcaacacataacataatcaaactaacccaacaagatgaaaatcccttttgaaccataat |
24018433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 10998014 - 10997805
Alignment:
| Q |
1 |
aaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||| |
|
|
| T |
10998014 |
aaataaataaggtgagagaggatccccctgacggaggccgcgtcctggcacaataggacccactgatgctccattaaccaaaatcgagtaatcaaccgtc |
10997915 |
T |
|
| Q |
101 |
tcaacacaaagcataatccaactaacccatcgaga-agaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgcttta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10997914 |
tcaacacaaagcataatccaactaacccatcgagataaaaaatcccatttgaatcatgatttctcgtaggtaatcccaatctaatctatcatatgcttta |
10997815 |
T |
|
| Q |
200 |
ctgatgtcca |
209 |
Q |
| |
|
|| ||||||| |
|
|
| T |
10997814 |
ctaatgtcca |
10997805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 32284928 - 32285132
Alignment:
| Q |
5 |
aaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaa |
104 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||| || ||||| |||||||||||||| | |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
32284928 |
aaataaggtgaaagaggatcaccctgacgaaggccacgccctggtacaataggacccaccgatgctccattaaccaagaccgagtaatcaaccgtctcaa |
32285027 |
T |
|
| Q |
105 |
cacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttactgat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| | ||||||||| ||||||||||| ||||||||||||| | | ||||| |||||||| || |
|
|
| T |
32285028 |
cacaaagcataatccaactaacccatcgagatgagaaacctaattgaatcatgatttctcgtagataatcccaatctagtatatcataagctttactaat |
32285127 |
T |
|
| Q |
205 |
gtcca |
209 |
Q |
| |
|
||||| |
|
|
| T |
32285128 |
gtcca |
32285132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 26706187 - 26706030
Alignment:
| Q |
44 |
cctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaac |
143 |
Q |
| |
|
||||| ||||||| |||||| | ||| |||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||| |
|
|
| T |
26706187 |
cctggtacaatagaacccaccgatgctgcattaaccaagacggagtaatcaaccgtctcaacacaaagcataatccagctaacccatcgagatgagaaac |
26706088 |
T |
|
| Q |
144 |
ccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
201 |
Q |
| |
|
||||||||||||| || ||| |||| || ||||||||||| || ||||| |||||||| |
|
|
| T |
26706087 |
ccatttgaatcatgatatcttgtagatagtcccaatctaacctatcataagctttact |
26706030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 46092675 - 46092883
Alignment:
| Q |
1 |
aaataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
46092675 |
aaataaataaggtgagagaggatctccctgacggaggccgcgtcctggaacaataggacccactgatgctccattaacaaaaactgagtaatcaaccgtc |
46092774 |
T |
|
| Q |
101 |
tcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttac |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46092775 |
tcaacacaaaacataatccaactaacccatcaagatgaaaaacccatttgaatcatgattcctcgtaggtaatcccaatctaatctatcatatgctttac |
46092874 |
T |
|
| Q |
201 |
tgatgtcca |
209 |
Q |
| |
|
| ||||||| |
|
|
| T |
46092875 |
taatgtcca |
46092883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 45276466 - 45276602
Alignment:
| Q |
71 |
ccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggt |
170 |
Q |
| |
|
||||| |||||||| | |||||| || ||||||||||||||||||||||| | || ||| ||||| | ||| |||||||| || || || || | |
|
|
| T |
45276466 |
ccattgaccaaaactgtgtaatcgacggtctcaacacaaagcataatccatcgaatccacttctctgaaaatctcatctgaatcattatatcacggagat |
45276565 |
T |
|
| Q |
171 |
aatcccaatctaatctgtcatatgctttactgatgtc |
207 |
Q |
| |
|
| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
45276566 |
actcccaatctaatctgtcataagctttgctgatgtc |
45276602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 10211269 - 10211075
Alignment:
| Q |
7 |
ataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaaca |
106 |
Q |
| |
|
||||||||| |||||||| |||||||| ||| |||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10211269 |
ataaggtgaaagaggatcaccttgacgaaggtcgcgccctggcacaataggacccaccgatgctccattaaccaagaccgagtaatcaactgtctcaaca |
10211170 |
T |
|
| Q |
107 |
caaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
201 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||||||||||| |||| || ||||| ||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
10211169 |
caaagcataatccaactaacccatctagaggagaaacccatttgagtcatgatatctcgaaggtaatcccagtctaatctatcataagctttact |
10211075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 23771981 - 23772188
Alignment:
| Q |
2 |
aataaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtct |
101 |
Q |
| |
|
|||||||||||||| | ||||| || ||||| |||| || ||||| |||||||||| |||| ||||| |||||| | || || |||||| | |||| |
|
|
| T |
23771981 |
aataaataaggtgaaatgggatcaccctgacgaaggctgcaccctggtacaataggacacactggtgctccgttaacctagactgaataatcatccgtct |
23772080 |
T |
|
| Q |
102 |
caacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
201 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| || ||||||||||||||||| || |||||||| ||||||||||||| ||| ||||| |||||||| |
|
|
| T |
23772081 |
caacacaaagcataatacagctaacccatcgagatgagaaacccatttgaatcatgatatctcgtagataatcccaatctagtctatcataagctttact |
23772180 |
T |
|
| Q |
202 |
gatgtcca |
209 |
Q |
| |
|
||||||| |
|
|
| T |
23772181 |
aatgtcca |
23772188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 27175711 - 27175607
Alignment:
| Q |
11 |
ggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaacacaaa |
110 |
Q |
| |
|
||||| || ||||||| ||||| ||||| |||||||||| ||||||||| || | | |||||||||||| |||||||| || | ||||||||||||| |
|
|
| T |
27175711 |
ggtgaaaggggatccctctgacgaaggccacgtcctggcataataggacctacatatgttccattaaccaagaccgagtagtctatggtctcaacacaaa |
27175612 |
T |
|
| Q |
111 |
gcata |
115 |
Q |
| |
|
||||| |
|
|
| T |
27175611 |
gcata |
27175607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 51194035 - 51194239
Alignment:
| Q |
5 |
aaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaa |
104 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||| |||| ||||| |||||||||||||| | |||| ||||||||| | ||||||||||| |||||||| |
|
|
| T |
51194035 |
aaataaggtgaaagaggatcaccttgacgaaggtcgcgccctggtacaataggacccaccgatgctctattaaccaagatcgagtaatcaattgtctcaa |
51194134 |
T |
|
| Q |
105 |
cacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttactgat |
204 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||||||||||||| || |||||||| |||| |||||||| ||| ||||| |||||||| || |
|
|
| T |
51194135 |
cacaaagcataatccaactaaccgatcgagatgagaaacccatttgaatcatgatatctcgtagataattccaatctagtctatcataagctttactaat |
51194234 |
T |
|
| Q |
205 |
gtcca |
209 |
Q |
| |
|
||||| |
|
|
| T |
51194235 |
gtcca |
51194239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 21687793 - 21687613
Alignment:
| Q |
5 |
aaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaa |
104 |
Q |
| |
|
|||||||||||||||||||| || | | | ||| ||| ||||||||||||||||||||| | |||||||||||||| | |||||| ||||| ||||||| |
|
|
| T |
21687793 |
aaataaggtgagagaggatcaccctaatgaaggtcgcaccctggcacaataggacccactgatgctccattaaccaagatcgagtagtcaaccgtctcaa |
21687694 |
T |
|
| Q |
105 |
cacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatc |
185 |
Q |
| |
|
||||||| |||||| |||||||||||| ||| ||||| |||||||||||||| || ||||||| ||| ||||||||||||| |
|
|
| T |
21687693 |
cacaaaggataatctaactaacccatctagaggaaaaccccatttgaatcatgatatctcgtaagtagtcccaatctaatc |
21687613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 8563948 - 8563905
Alignment:
| Q |
17 |
agaggatccccttgacggaggccgcgtcctggcacaataggacc |
60 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
8563948 |
agaggatccccttgacggagaccgcgtcctggaataataggacc |
8563905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 30470862 - 30470911
Alignment:
| Q |
71 |
ccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatcca |
120 |
Q |
| |
|
||||| |||||||| | |||||| || ||||||||||||||||||||||| |
|
|
| T |
30470862 |
ccattgaccaaaactgtgtaatcgacggtctcaacacaaagcataatcca |
30470911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 10983188 - 10983232
Alignment:
| Q |
160 |
ttctcgtaggtaatcccaatctaatctgtcatatgctttactgat |
204 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||| |||||||| |
|
|
| T |
10983188 |
ttctcgtagatattcccaatctattctgtcatatgccttactgat |
10983232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 214439 - 214235
Alignment:
| Q |
5 |
aaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaa |
104 |
Q |
| |
|
||||||||||| || ||||| || ||||| |||||| ||||||| | ||||||| |||| | |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
214439 |
aaataaggtgaaaggggatcaccctgacgaaggccgtgtcctggtagaataggatccaccgatgctccattaaccaagaccgagtaatcaactgcctcaa |
214340 |
T |
|
| Q |
105 |
cacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttactgat |
204 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| || ||||||||||||| ||| || |||||||| ||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
214339 |
cacaaagcataatccagctaatccatcgagatgagaaacccatttgaagcatgatatctcgtagataatcccaatctagtctatcataagctttactgat |
214240 |
T |
|
| Q |
205 |
gtcca |
209 |
Q |
| |
|
||||| |
|
|
| T |
214239 |
gtcca |
214235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 54448 - 54252
Alignment:
| Q |
5 |
aaataaggtgagagaggatccccttgacggaggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaa |
104 |
Q |
| |
|
||||||||||| || || ||||| ||||| ||||||| ||| | | |||||||||||| || |||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
54448 |
aaataaggtgaaagggggtccccctgacgaaggccgcaccctagtaaaataggacccaccaatgctccattaaccaagaccgagtaattaaccgtctcaa |
54349 |
T |
|
| Q |
105 |
cacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
201 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||| || ||||||||||||||||| || ||||| || ||||||||||||| ||| ||||| |||||||| |
|
|
| T |
54348 |
cacaaaacataatccagctaacccattgagacgagaaacccatttgaatcatgatatctcgcagataatcccaatctagtctatcataagctttact |
54252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 4382 - 4548
Alignment:
| Q |
35 |
aggccgcgtcctggcacaataggacccactaaagctccattaaccaaaaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatcgag |
134 |
Q |
| |
|
|||||||| ||| ||||||||| |||||| | |||||| ||||||| | |||||||||||| ||||||||| |||||||| |||| | ||||||||||| |
|
|
| T |
4382 |
aggccgcgccctagcacaatagaacccaccgatgctccaataaccaagatcgagtaatcaaccgtctcaacataaagcatagtccagcaaacccatcgag |
4481 |
T |
|
| Q |
135 |
aagaaaaacccatttgaatcataatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
201 |
Q |
| |
|
| || |||||||||||| |||| || |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
4482 |
aggagaaacccatttgattcatgatatctcgtaggtaatcccaatctaatctatcataagctttact |
4548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 7072 - 7140
Alignment:
| Q |
88 |
gtaatcaactgtctcaacacaaagcataatccaactaacccatcgagaagaaaaacccatttgaatcat |
156 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||| |||||||| |
|
|
| T |
7072 |
gtaatcaactgtctcaacacatagcataatccattgaacccatctagtagaaaaacccatctgaatcat |
7140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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