View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8631_low_46 (Length: 217)

Name: NF8631_low_46
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8631_low_46
NF8631_low_46
[»] chr7 (7 HSPs)
chr7 (20-156)||(17052851-17052987)
chr7 (57-156)||(4616004-4616103)
chr7 (77-156)||(33589151-33589227)
chr7 (89-141)||(45201118-45201171)
chr7 (77-156)||(7253969-7254047)
chr7 (77-113)||(9599421-9599457)
chr7 (77-113)||(9826992-9827028)
[»] chr3 (4 HSPs)
chr3 (20-156)||(44887346-44887482)
chr3 (20-156)||(31778096-31778231)
chr3 (23-156)||(31546813-31546946)
chr3 (58-139)||(28958210-28958291)
[»] chr1 (4 HSPs)
chr1 (26-156)||(22192350-22192481)
chr1 (23-156)||(21404280-21404412)
chr1 (90-156)||(3073252-3073318)
chr1 (77-122)||(31874534-31874579)
[»] chr5 (2 HSPs)
chr5 (85-155)||(17757476-17757546)
chr5 (100-156)||(9387535-9387592)
[»] chr8 (1 HSPs)
chr8 (77-156)||(31263317-31263392)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 17052987 - 17052851
Alignment:
Q  20 ttctttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17052987 ttctttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 17052888  T
Q  120 cttttggtttctaatatatatttcatttttgtttgtt 156  Q
    |||||||||||||||||||||| |||||||| |||||    
T  17052887 cttttggtttctaatatatattccatttttgcttgtt 17052851  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 4616004 - 4616103
Alignment:
Q  57 attttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 156  Q
    ||||||||  ||||| |||||||||||||||||| |||||||| |||||||||||| |||| ||||| ||||| |||| |||||| |||||||| |||||    
T  4616004 attttgtctctgtaaatgcttacttttgagttttttctagcactccttgtgcttgaaatttttctttgggtttttaatgtatattccatttttgcttgtt 4616103  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 33589151 - 33589227
Alignment:
Q  77 tacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 156  Q
    |||||||||| |||||||||||||||||||||||||||  |||||| | |||||||  ||||||| ||||||||||||||    
T  33589151 tacttttgagctttctctagcacaccttgtgcttgagaaatctcttgt-gtttcta--atatattccatttttgtttgtt 33589227  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 45201171 - 45201118
Alignment:
Q  89 ttctctagcacaccttgtgcttgagatttctctttt-ggtttctaatatatatt 141  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  45201171 ttctctagcacaccttgtgcttgagactcctcttttgggtttctaatatatatt 45201118  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 7254047 - 7253969
Alignment:
Q  77 tacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 156  Q
    |||| ||||| ||| |||||||||||||||||||||  | |||||||  |||| ||||||||||| |||||||| |||||    
T  7254047 tactgttgagatttttctagcacaccttgtgcttgatttctctctttgagttt-taatatatattccatttttgcttgtt 7253969  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 9599457 - 9599421
Alignment:
Q  77 tacttttgagttttctctagcacaccttgtgcttgag 113  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  9599457 tacttttgaggtttctttagcacaccttgtgcttgag 9599421  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 9827028 - 9826992
Alignment:
Q  77 tacttttgagttttctctagcacaccttgtgcttgag 113  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  9827028 tacttttgaggtttctttagcacaccttgtgcttgag 9826992  T

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Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 44887482 - 44887346
Alignment:
Q  20 ttctttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44887482 ttctttggctattttttgtccttgttctgttggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 44887383  T
Q  120 cttttggtttctaatatatatttcatttttgtttgtt 156  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  44887382 ctttttgtttctaatatatatttcatttttgcttgtt 44887346  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 31778231 - 31778096
Alignment:
Q  20 ttctttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 119  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31778231 ttctttggctattttt-gcccttgttcttttggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 31778133  T
Q  120 cttttggtttctaatatatatttcatttttgtttgtt 156  Q
    |||||| ||||||||||||||| |||||||| |||||    
T  31778132 cttttgatttctaatatatattccatttttgcttgtt 31778096  T

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Target: chr3; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 31546946 - 31546813
Alignment:
Q  23 tttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttctctt 122  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||| |||||    
T  31546946 tttggctattttttgtccttgttctgttggctacattttgtccttgtaattgtttacttttgagttatttctagcacaccttgtgcttgaaattcctctt 31546847  T
Q  123 ttggtttctaatatatatttcatttttgtttgtt 156  Q
    ||||||||||||||||||| |||||||| |||||    
T  31546846 ttggtttctaatatatattccatttttgcttgtt 31546813  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 28958210 - 28958291
Alignment:
Q  58 ttttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatata 139  Q
    ||||| |||||||||||  |||||| |||  |||||||||||||||||||||||||| ||||||| || ||  |||||||||    
T  28958210 ttttggccttgtaattgtgtactttcgagcattctctagcacaccttgtgcttgagaattctcttgtgtttcttaatatata 28958291  T

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Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 22192350 - 22192481
Alignment:
Q  26 ggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgaga-tttctctttt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22192350 ggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagatttctctagcacaccttgtgcttgagactttctctttt 22192449  T
Q  125 ggtttctaatatatatttcatttttgtttgtt 156  Q
    ||||||||||||||||| |||||||| |||||    
T  22192450 ggtttctaatatatattccatttttgcttgtt 22192481  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 21404412 - 21404280
Alignment:
Q  23 tttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttctctt 122  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||    
T  21404412 tttggctattttta-tccttgttctattggctacattttgtccttgtaattgtttacttttgagttatttctagcacaccttgtgcttgaaatttctctt 21404314  T
Q  123 ttggtttctaatatatatttcatttttgtttgtt 156  Q
    ||||||||| ||||||||| |||||||| |||||    
T  21404313 ttggtttctgatatatattccatttttgcttgtt 21404280  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 3073318 - 3073252
Alignment:
Q  90 tctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 156  Q
    |||| |||||||||||||||||| ||||||||||  |||| |||||||||||||||||||| |||||    
T  3073318 tctcaagcacaccttgtgcttgaaatttctctttgagtttttaatatatatttcatttttgcttgtt 3073252  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 31874534 - 31874579
Alignment:
Q  77 tacttttgagttttctctagcacaccttgtgcttgagatttctctt 122  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||||||    
T  31874534 tactgttgagctttctttagcacaccttgtgcttgagaattctctt 31874579  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 17757546 - 17757476
Alignment:
Q  85 agttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgt 155  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||  ||||||||||||    
T  17757546 agttttttctagcacaccttgtgcttgaaatttctctttgggtttttaatatatattatatttttgtttgt 17757476  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 9387592 - 9387535
Alignment:
Q  100 accttgtgcttgagatttctctttt-ggtttctaatatatatttcatttttgtttgtt 156  Q
    ||||||||||||||| ||||||||| |||||||||||||||||  ||||||| |||||    
T  9387592 accttgtgcttgagacttctcttttgggtttctaatatatattcaatttttgattgtt 9387535  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 31263392 - 31263317
Alignment:
Q  77 tacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 156  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||  || |||||||  ||||||| ||||||||||||||    
T  31263392 tactttggagctttctctagcacaccttgtgcttgagaattctc--ttagtttcta--atatattccatttttgtttgtt 31263317  T

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