View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_5 (Length: 519)
Name: NF8631_low_5
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 54151442 - 54151122
Alignment:
| Q |
17 |
actatcgaagtgcttgccctttggtttgcatcacgctaagtcactttaacattcaactcattccttatatgttaaggagtatctttctgtttttcatggt |
116 |
Q |
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| T |
54151442 |
actatcgaagtgcttgccctttggtttgcaacacgctaagtcactttaacattcagctcattccttatatgttaaggagtatctttctgtttttcatggt |
54151343 |
T |
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| Q |
117 |
ggttcgaggagaagaagcaatgattcaagatttcattactcacagagtgaatatcaatccaaaatgaatcagttcaataaaatatagcagcaatcatttt |
216 |
Q |
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| T |
54151342 |
ggttcgaggagaagaagcaatgattcaagatttcaatactcacagagtgaatatcaatccaaaatgaatcagttcaataaaatatagcagcaatcatttt |
54151243 |
T |
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| Q |
217 |
tgtttgaaaactagctgaaatttacctttggagtgttatctgtgagggaaagactcgccatccactttgaagcctcttcattagagtatgagtataatgt |
316 |
Q |
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| T |
54151242 |
tgttt-----------gaaatttacctttggagtgttatctgtgagggaaagactcgccatccactttgaagcctcttcatta------gagtataatgt |
54151160 |
T |
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| Q |
317 |
tacattctctttcaatcaacgtattttttatcaatttt |
354 |
Q |
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| T |
54151159 |
tacattctctttcaatcaacgtattttggatcaatttt |
54151122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 346 - 508
Target Start/End: Complemental strand, 54151075 - 54150913
Alignment:
| Q |
346 |
atcaattttcgatcaatttgctttccagcatgatcctcagcaatctgaaagtagaaaataaaaatcataaacaagagtggaatgataaaatcacagatga |
445 |
Q |
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| T |
54151075 |
atcaattttcgatcaatttgctttccagcatgatcctcagcaatctgaaagtagaaaataaaaatcataaacaagagtggaatgataaaatcacagatga |
54150976 |
T |
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| Q |
446 |
atagtagaagaaaatcagagaatatcttaccatagctaatatagcattcattacttgagtatt |
508 |
Q |
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| T |
54150975 |
atagtagaagaaaattagagaatatcttaccatagctaatatatcattcattacttgagtatt |
54150913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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