View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_7 (Length: 515)
Name: NF8631_low_7
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 224 - 433
Target Start/End: Complemental strand, 25812000 - 25811800
Alignment:
| Q |
224 |
tttgggacttcacttggtccttatattattgcttcattagggaacccatttgacggacttaccttgaaatctccatttgctactaaccctgtaaaattaa |
323 |
Q |
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| T |
25812000 |
tttgggacttcacttggtccttatattattgcttcattagggaacccatttgacggacttaccttgaaatctccatttgctactaaccctgtaaaattaa |
25811901 |
T |
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| Q |
324 |
atattgaaaatcttattatagtcatgtaaaatgttattttgaattttaaaatgatatttatgatatttatatcttgaataccaaagggaagtgtgttact |
423 |
Q |
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| T |
25811900 |
atattgaaattcttattatagtcatgtaaaatgttattttgaattttaaaatgatat---------ttatattttgaataccatagggaagtgagttact |
25811810 |
T |
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| Q |
424 |
tcatctcact |
433 |
Q |
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|||||||||| |
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| T |
25811809 |
tcatctcact |
25811800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 21 - 362
Target Start/End: Complemental strand, 6428257 - 6427896
Alignment:
| Q |
21 |
tgatgcagatgtcacgaacacattaagttgttcaagtttagcacacgtgcaagcagcacaaaacgtgacagattaaattgaacctttttctac------- |
113 |
Q |
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| T |
6428257 |
tgatgcagatgccacggacacattaagttgctcaagttgtgcacacgtgcgagccgcgcaaaatgtgacagaataaattgaacctttttctaccggtatt |
6428158 |
T |
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| Q |
114 |
-----gattatttcagcat--------agtcttattgcatgtctacttagtggtactatgaggatcattccaccttgtgtttaccttgattttattagct |
200 |
Q |
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| T |
6428157 |
tcttggcttatttctgcgtcgttacctagtcttattgcatgtctaccttgtggtactatgaggatcattccaccttgtttttgccctgattctactagct |
6428058 |
T |
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| Q |
201 |
caatggggccgtttgatttcctgtttgggacttcacttggtccttatattattgcttcattagggaacccatttgacggacttaccttgaaatctccatt |
300 |
Q |
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| T |
6428057 |
caactgtgccgtttgatttccagtttgggacttcacttggtccttctattattgcttcattagggaacccatttgatggacttacctcaaaatctccatt |
6427958 |
T |
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| Q |
301 |
tgctactaaccctgtaaaattaaatattgaaaatcttattatagtcatgtaaaatgttattt |
362 |
Q |
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| T |
6427957 |
tgcaactaaccctttaaaataaaataatgaaaatcttagtatagttatgtaaaatgttattt |
6427896 |
T |
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