View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8631_low_8 (Length: 488)

Name: NF8631_low_8
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8631_low_8
NF8631_low_8
[»] chr1 (8 HSPs)
chr1 (221-485)||(4887660-4887919)
chr1 (21-201)||(4887443-4887623)
chr1 (309-351)||(34721844-34721886)
chr1 (312-402)||(38797572-38797672)
chr1 (355-403)||(2099628-2099676)
chr1 (309-345)||(14334073-14334109)
chr1 (221-338)||(34387710-34387828)
chr1 (307-345)||(47411715-47411753)
[»] chr6 (2 HSPs)
chr6 (247-403)||(3482022-3482190)
chr6 (414-461)||(16540227-16540274)
[»] chr3 (4 HSPs)
chr3 (412-461)||(21261228-21261277)
chr3 (355-398)||(25359520-25359563)
chr3 (221-275)||(50321839-50321893)
chr3 (312-340)||(50550616-50550644)
[»] chr5 (6 HSPs)
chr5 (309-403)||(42858147-42858252)
chr5 (307-351)||(28110442-28110486)
chr5 (312-351)||(18851086-18851125)
chr5 (312-351)||(38845485-38845524)
chr5 (356-402)||(6813379-6813425)
chr5 (421-461)||(38265061-38265101)
[»] chr8 (7 HSPs)
chr8 (351-403)||(7244522-7244573)
chr8 (307-351)||(39753941-39753985)
chr8 (314-403)||(44141001-44141091)
chr8 (309-345)||(38868537-38868573)
chr8 (312-351)||(13384658-13384697)
chr8 (358-402)||(32101172-32101216)
chr8 (309-337)||(40769385-40769413)
[»] chr4 (7 HSPs)
chr4 (351-403)||(33456464-33456516)
chr4 (309-345)||(53913587-53913623)
chr4 (309-343)||(30357551-30357585)
chr4 (412-461)||(43385320-43385369)
chr4 (413-462)||(53713479-53713527)
chr4 (312-340)||(8604637-8604665)
chr4 (312-340)||(21691227-21691255)
[»] chr2 (5 HSPs)
chr2 (355-403)||(13912883-13912931)
chr2 (221-351)||(3352026-3352157)
chr2 (307-403)||(33019097-33019204)
chr2 (413-461)||(9143094-9143142)
chr2 (413-461)||(12037178-12037226)
[»] scaffold0168 (2 HSPs)
scaffold0168 (414-461)||(31949-31996)
scaffold0168 (421-461)||(32035-32075)
[»] chr7 (1 HSPs)
chr7 (353-386)||(40431536-40431569)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 221 - 485
Target Start/End: Original strand, 4887660 - 4887919
Alignment:
Q  221 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgatttataattgattt 320  Q
    |||||||||||||||||||||||||||| ||     ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  4887660 attctgatatgttttgttgttgtttagttga-----ttttgtctttagaattggtcaaatttaaagttaagatttgtaaccattgatttagaattgattt 4887754  T
Q  321 tcacacacaaatttatagttaaacttactttattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattcaacataatcaaattact 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4887755 tcacacacaaatttatagttaaacttactttattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattcaacgtaatcaaattact 4887854  T
Q  421 tttaaccaaaatcaaatcaacataatcaattttatcaaaatgctcattgccacaccaccaaactc 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  4887855 tttaaccaaaatcaaatcaacataatcaattttatcaaaatgctcatcgccacactaccaaactc 4887919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 4887443 - 4887623
Alignment:
Q  21 ggccatagttggaaggacatgacttaattcctaatcactccagttgctttgcaattcctatgatagtaggaccatttgggtcaatctgaattgattttcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4887443 ggccatagttggaaggacatgacttaattcctaatcactccagttgctttgcaattcctatgatagtaggaccatttgggtcaatctgaattgattttcc 4887542  T
Q  121 taagtctgattcataacggtgtccaaaataaatgtttggacaatagtagcagcacaatgcacatcataatagtgagtttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4887543 taagtctgattcataacggtgtccaaaataaatgtttggacaatagcagcagcacaatgcacatcataatagtgagtttca 4887623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 34721886 - 34721844
Alignment:
Q  309 tataattgattttcacacacaaatttatagttaaacttacttt 351  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  34721886 tataattgattttcacacacaaatttatagttcgacttacttt 34721844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 38797672 - 38797572
Alignment:
Q  312 aattgattttcacacacaaatttatagttaaacttactt----------tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaat 401  Q
    ||||||||||||||||||||||||||||| |||| ||||          ||| |||||| |||||||||||  ||||| ||||||||| |||||||||||    
T  38797672 aattgattttcacacacaaatttatagttcaactcacttttaaataatgtatgcaaacataaatcacttttaatcaaatttatttttaaccaaaatcaat 38797573  T
Q  402 t 402  Q
    |    
T  38797572 t 38797572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 2099676 - 2099628
Alignment:
Q  355 caaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 403  Q
    ||||||||||||||||||  ||||||||| ||||| |||||||||||||    
T  2099676 caaacacaaatcacttttactcaaaattacttttaaccaaaatcaattc 2099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 14334109 - 14334073
Alignment:
Q  309 tataattgattttcacacacaaatttatagttaaact 345  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14334109 tataattgattttcatacacaaatttatagttaaact 14334073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 338
Target Start/End: Complemental strand, 34387828 - 34387710
Alignment:
Q  221 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgatt-tataattgatt 319  Q
    ||||||| || ||||||||||||| |||||||   || ||||||| | |||||||   | || |||||  || ||||| |  |||||| |||||||||||    
T  34387828 attctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgatt 34387729  T
Q  320 ttcacacacaaatttatag 338  Q
    |||||||||||||||||||    
T  34387728 ttcacacacaaatttatag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 47411753 - 47411715
Alignment:
Q  307 tttataattgattttcacacacaaatttatagttaaact 345  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  47411753 tttataattgatttttacaaacaaatttatagttaaact 47411715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 403
Target Start/End: Original strand, 3482022 - 3482190
Alignment:
Q  247 gtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgattt-ataattgattttcacacacaaatttatagttaaact 345  Q
    |||||||  ||| |||||||||||||||| | | || ||||||||||||| | || ||||||| | ||||||||||||||||||| ||||||||| ||||    
T  3482022 gtagaattgattctgtctttagaattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaact 3482121  T
Q  346 tactt-----------tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 403  Q
    |||||           ||||||||||||||||||||||  | | ||| ||||||| |||||||||||||    
T  3482122 tacttttacatgaatgtattcaaacacaaatcacttttattgagaatcatttttaaccaaaatcaattc 3482190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 461
Target Start/End: Original strand, 16540227 - 16540274
Alignment:
Q  414 aattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 461  Q
    |||||||| ||||||||||||| || |||||||||||| |||||||||    
T  16540227 aattacttctaaccaaaatcaattctacataatcaattctatcaaaat 16540274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 21261277 - 21261228
Alignment:
Q  412 caaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 461  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||    
T  21261277 caaattacttttaaccaaaatcaattctacataatcaattttatcaaaat 21261228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 25359563 - 25359520
Alignment:
Q  355 caaacacaaatcacttttggtcaaaattatttttagccaaaatc 398  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||    
T  25359563 caaacacaaatcactttttgtcagaattatttttaaccaaaatc 25359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 50321893 - 50321839
Alignment:
Q  221 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgat 275  Q
    ||||||| |||||| |||||| ||||||||||| ||||||||||  |||||||||    
T  50321893 attctgacatgtttggttgttttttagtagaattaattttgtctcaagaattgat 50321839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 340
Target Start/End: Original strand, 50550616 - 50550644
Alignment:
Q  312 aattgattttcacacacaaatttatagtt 340  Q
    |||||||||||||||||||||||||||||    
T  50550616 aattgattttcacacacaaatttatagtt 50550644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 403
Target Start/End: Original strand, 42858147 - 42858252
Alignment:
Q  309 tataattgattttcacacacaaatttatagttaaacttac-----------tttattcaaacacaaatcacttttggtcaaaattatttttagccaaaat 397  Q
    |||||||||||||||||||||||||||||||| |||| ||           |||||||||||||| ||||||||| |||| ||| ||||||| |||||||    
T  42858147 tataattgattttcacacacaaatttatagttcaactcacttttacatgaatttattcaaacacagatcacttttagtcagaatcatttttaaccaaaat 42858246  T
Q  398 caattc 403  Q
    ||||||    
T  42858247 caattc 42858252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 28110486 - 28110442
Alignment:
Q  307 tttataattgattttcacacacaaatttatagttaaacttacttt 351  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||    
T  28110486 tttagaattgattttcacacacaaatttatagttgaactcacttt 28110442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 18851125 - 18851086
Alignment:
Q  312 aattgattttcacacacaaatttatagttaaacttacttt 351  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  18851125 aattgattttcacacacatatttatagttaaactcacttt 18851086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 38845485 - 38845524
Alignment:
Q  312 aattgattttcacacacaaatttatagttaaacttacttt 351  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  38845485 aattgattttcacacacaaatatatagttaaactcacttt 38845524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 6813379 - 6813425
Alignment:
Q  356 aaacacaaatcacttttggtcaaaattatttttagccaaaatcaatt 402  Q
    ||||||| | ||||||||||||||||||||||||  |||||||||||    
T  6813379 aaacacataccacttttggtcaaaattatttttaatcaaaatcaatt 6813425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 461
Target Start/End: Original strand, 38265061 - 38265101
Alignment:
Q  421 tttaaccaaaatcaaatcaacataatcaattttatcaaaat 461  Q
    ||||||||||||||| || ||| ||||||||||||||||||    
T  38265061 tttaaccaaaatcaattctacaaaatcaattttatcaaaat 38265101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 7244573 - 7244522
Alignment:
Q  351 tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 403  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  7244573 tattcaaacacaaatcacttttggtc-aagttatttttaaccaaaatcaattc 7244522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 39753941 - 39753985
Alignment:
Q  307 tttataattgattttcacacacaaatttatagttaaacttacttt 351  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  39753941 tttataattgtttttcacacacaaatttatagtttaacttacttt 39753985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 44141091 - 44141001
Alignment:
Q  314 ttgattttcacacacaaatttatagttaaacttacttt-attcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 403  Q
    |||||||||||||| || ||||||||| ||||  |||| || ||||||||| |||||||| |||| ||| | ||||| |||||||||||||    
T  44141091 ttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattc 44141001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 38868537 - 38868573
Alignment:
Q  309 tataattgattttcacacacaaatttatagttaaact 345  Q
    |||||||||||||||||||||||||||||||| ||||    
T  38868537 tataattgattttcacacacaaatttatagttcaact 38868573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 13384697 - 13384658
Alignment:
Q  312 aattgattttcacacacaaatttatagttaaacttacttt 351  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  13384697 aattgattttcacacacaaatttatagttcaactcacttt 13384658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 32101172 - 32101216
Alignment:
Q  358 acacaaatcacttttggtcaaaattatttttagccaaaatcaatt 402  Q
    |||||||||||||||| ||  ||||||||||| ||||||||||||    
T  32101172 acacaaatcacttttgatcgtaattatttttaaccaaaatcaatt 32101216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 40769413 - 40769385
Alignment:
Q  309 tataattgattttcacacacaaatttata 337  Q
    |||||||||||||||||||||||||||||    
T  40769413 tataattgattttcacacacaaatttata 40769385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 33456464 - 33456516
Alignment:
Q  351 tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 403  Q
    |||||||||| |||| ||||||||||||||||| ||||| |||||||||||||    
T  33456464 tattcaaacataaataacttttggtcaaaattacttttaaccaaaatcaattc 33456516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 53913623 - 53913587
Alignment:
Q  309 tataattgattttcacacacaaatttatagttaaact 345  Q
    ||||||||||||||||||| |||||||||||||||||    
T  53913623 tataattgattttcacacataaatttatagttaaact 53913587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 30357551 - 30357585
Alignment:
Q  309 tataattgattttcacacacaaatttatagttaaa 343  Q
    ||||||||||||| |||||||||||||||||||||    
T  30357551 tataattgatttttacacacaaatttatagttaaa 30357585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 43385369 - 43385320
Alignment:
Q  412 caaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 461  Q
    ||||| |||||||| ||||||||| || | ||||||||||||||||||||    
T  43385369 caaatcacttttaatcaaaatcaattctatataatcaattttatcaaaat 43385320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 53713527 - 53713479
Alignment:
Q  413 aaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaatg 462  Q
    |||||||||||||| |||||||| |  |||||||||||||||||||||||    
T  53713527 aaattacttttaac-aaaatcaattttacataatcaattttatcaaaatg 53713479  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 8604665 - 8604637
Alignment:
Q  312 aattgattttcacacacaaatttatagtt 340  Q
    |||||||||||||||||||||||||||||    
T  8604665 aattgattttcacacacaaatttatagtt 8604637  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 21691255 - 21691227
Alignment:
Q  312 aattgattttcacacacaaatttatagtt 340  Q
    |||||||||||||||||||||||||||||    
T  21691255 aattgattttcacacacaaatttatagtt 21691227  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 13912883 - 13912931
Alignment:
Q  355 caaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 403  Q
    |||||||||||||||||| |||| ||||| ||||| |||||||||||||    
T  13912883 caaacacaaatcactttttgtcagaattaattttaaccaaaatcaattc 13912931  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 351
Target Start/End: Original strand, 3352026 - 3352157
Alignment:
Q  221 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgatt-tataattgatt 319  Q
    ||||||| || ||||||||||||| |||||||   || ||||||| | |||||||   | || |||||  || ||||| |  |||||| |||||||||||    
T  3352026 attctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgatt 3352125  T
Q  320 ttcacacacaaatttatagttaaacttacttt 351  Q
    |||||||||||||||||  || ||||||||||    
T  3352126 ttcacacacaaatttatgtttcaacttacttt 3352157  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 403
Target Start/End: Complemental strand, 33019204 - 33019097
Alignment:
Q  307 tttataattgattttcacacacaaatttatagttaaacttacttt-----------attcaaacacaaatcacttttggtcaaaattatttttagccaaa 395  Q
    |||| |||||||||||||||| |||||||||||| |||| |||||           || |||||||||||||||||| |||| ||| | ||||| |||||    
T  33019204 tttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaa 33019105  T
Q  396 atcaattc 403  Q
    ||||||||    
T  33019104 atcaattc 33019097  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 9143094 - 9143142
Alignment:
Q  413 aaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 461  Q
    ||||||| |||||| |||||||| || |||||||||||||||| |||||    
T  9143094 aaattacatttaactaaaatcaattctacataatcaattttattaaaat 9143142  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 12037178 - 12037226
Alignment:
Q  413 aaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 461  Q
    |||| ||||||||||||||| |  ||||||||||||||||||| |||||    
T  12037178 aaatcacttttaaccaaaataagttcaacataatcaattttataaaaat 12037226  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 461
Target Start/End: Original strand, 31949 - 31996
Alignment:
Q  414 aattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 461  Q
    |||||||| ||||||||||||| || |||||||||||| |||||||||    
T  31949 aattacttctaaccaaaatcaattctacataatcaattctatcaaaat 31996  T

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Target: scaffold0168; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 461
Target Start/End: Original strand, 32035 - 32075
Alignment:
Q  421 tttaaccaaaatcaaatcaacataatcaattttatcaaaat 461  Q
    ||||||||||||||| || |||||||||||| |||||||||    
T  32035 tttaaccaaaatcaattctacataatcaattctatcaaaat 32075  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 386
Target Start/End: Complemental strand, 40431569 - 40431536
Alignment:
Q  353 ttcaaacacaaatcacttttggtcaaaattattt 386  Q
    |||||||||||||||||||| |||||||||||||    
T  40431569 ttcaaacacaaatcacttttagtcaaaattattt 40431536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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