View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8632_low_2 (Length: 240)
Name: NF8632_low_2
Description: NF8632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8632_low_2 |
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| [»] scaffold0831 (1 HSPs) |
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Alignment Details
Target: scaffold0831 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 5198 - 4999
Alignment:
| Q |
25 |
ttgtttcgattaagactgaatatttgatgcaaaagtgtgatttgtttttgatatgatttgtttatactgttgaaacataaatggttgtttatacatctgt |
124 |
Q |
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| T |
5198 |
ttgttttgattaagactgaatatttgatgcagaagtgtgatttgtttttgatatgatttgtttatactgttgaaacataaatggttgtttatacatctgt |
5099 |
T |
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| Q |
125 |
acaaccaaaatagtcattgaaaagatgttttctgagatatatgttccaatcagtagtagtacattacgtcttctctattttcctgttgcattgcacttgt |
224 |
Q |
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| T |
5098 |
acaaccaaaatagtcattgaaaagatgttttctgatatatatgttccaatcagtagtagtacattacgtcttctctattttccttttgcattgcacttgt |
4999 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 17417803 - 17417770
Alignment:
| Q |
78 |
tgatttgtttatactgttgaaacataaatggttg |
111 |
Q |
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| T |
17417803 |
tgatttgtttatattgttgaaacataaatggttg |
17417770 |
T |
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