View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8633_high_1 (Length: 854)
Name: NF8633_high_1
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_high_1 |
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| [»] chr1 (14 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 270 - 854
Target Start/End: Complemental strand, 28663564 - 28662979
Alignment:
| Q |
270 |
gtaaatgttagaatgtacagtagtacctaaa-gagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatattgagtca |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28663564 |
gtaaatgttagaatgtacagtagtacctaaaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatatggagtca |
28663465 |
T |
|
| Q |
369 |
ttatgatttggaatgaattcttctaccattgttacatggctttctttgccatctcttcgtccagtcttcatttcaaattttggacctcccaactatacaa |
468 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28663464 |
ttatgatttggaatgaattcttctaccattgttacatggctttctttgccatcccttcgtcctgtcttcatttcaaattttggacctcccaactatacaa |
28663365 |
T |
|
| Q |
469 |
atgcaccaacataaaaatcttttaattttaagtctcaatttttatctgggatttctaatgtgcgactcttaacataccatggcaattccgtctctagcgg |
568 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28663364 |
atgcaacagcataaaaatcttttaattttaagtctcaatttttatgtgggatttctaatgtgcgactcttaacataccatggcaattccgtctctagcgg |
28663265 |
T |
|
| Q |
569 |
aaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaact |
668 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28663264 |
aaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaact |
28663165 |
T |
|
| Q |
669 |
tctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcgcatgactgcgtggaaacccacatatatatcattatatta |
768 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28663164 |
tctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcacatgactgcgtggaaacccacatatatatcattatatta |
28663065 |
T |
|
| Q |
769 |
actgcttctttaatccaaaaatgataacttcctgcgattatatttatactcacctcgactatgcaatcatggaagagatttctaac |
854 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28663064 |
attgcttctttaatccaaaaatgataacttgctgcgattatatttatactcacctcgactatgcaatcatggaagagatttctaac |
28662979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 28663840 - 28663700
Alignment:
| Q |
5 |
gtggggtatagtctgtggaccaaattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaattatgtttatgtttga |
104 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28663840 |
gtggggtatagtctatggaccatattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaattatgtttatgtttga |
28663741 |
T |
|
| Q |
105 |
cttttgaagtaaatgttatataatgtatatgaagcacggacac |
147 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
28663740 |
cttttgaagtaaatgt--tataatgtatatgaagcacagacac |
28663700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 540 - 738
Target Start/End: Complemental strand, 28654891 - 28654693
Alignment:
| Q |
540 |
acataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggttttt |
639 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
28654891 |
acataccattgcaataccgtctctagcagaaagagcaacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttc |
28654792 |
T |
|
| Q |
640 |
acatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcgcatgactgc |
738 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| | |||||||| |||||||| ||| ||| | || | ||||||| | ||||||||||||||||||| |
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|
| T |
28654791 |
acatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgc |
28654693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 298 - 462
Target Start/End: Complemental strand, 28606078 - 28605914
Alignment:
| Q |
298 |
aaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatattgagtcattatgatttggaatgaattcttctaccat |
397 |
Q |
| |
|
|||||||||| || ||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
28606078 |
aaagagcaaccgtggcttcaacgtcaatgccaatggcttgaaaactagaaagcactgaggatattgagtcattatgatttggaatgaattgttccaccac |
28605979 |
T |
|
| Q |
398 |
tgttacatggctttctttgccatctcttcgtccagtcttcatttcaaattttggacctcccaact |
462 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
28605978 |
ctttacatagctttctttgctatcctttcgtccactcttcatttcaaagtttggacctcccaact |
28605914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 540 - 738
Target Start/End: Complemental strand, 28635610 - 28635412
Alignment:
| Q |
540 |
acataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggttttt |
639 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||| |||||||| || ||||| ||||||||||||||||||||||| ||||| ||||||||||| || |
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|
| T |
28635610 |
acataccattgcaataccgtctctagcagatagagcgacaatgtcagcgcatgacactgtcaagggacattctttctcgacagctgctttgatggtattc |
28635511 |
T |
|
| Q |
640 |
acatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcgcatgactgc |
738 |
Q |
| |
|
||||||||||| |||| |||||| |||||||| | |||||||| |||||||| ||| | ||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
28635510 |
acatacttgaaatttctcatcccaaaacttctcaccgatgtctgctccgataccacaccatgcaccgttgctaaaagcagggatgcatcacatgactgc |
28635412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 540 - 738
Target Start/End: Complemental strand, 28605442 - 28605244
Alignment:
| Q |
540 |
acataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggttttt |
639 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||| ||||||||||| || | ||||||||||||||| | |
|
|
| T |
28605442 |
acataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgacactgtcaaaggacattctttttcaagagcagctttgatggtgctc |
28605343 |
T |
|
| Q |
640 |
acatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcgcatgactgc |
738 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| | |||||| |||||||| || || ||||| || ||||||||||||||||| ||||||||| |
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|
| T |
28605342 |
acatacttgaagtttctcatcccaaaacttctctccgctgtctgctccgataccacgccgtgcaccgtctccaaaagcagggatgcatcacatgactgc |
28605244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 298 - 463
Target Start/End: Complemental strand, 28635988 - 28635823
Alignment:
| Q |
298 |
aaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatattgagtcattatgatttggaatgaattcttctaccat |
397 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| || |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
28635988 |
aaagagcaaccgtggcttcaacgtcaacaccgatagcttgaaaacgagacaacactaaggatattgagtcattatggtttggaatgaattcttccaccac |
28635889 |
T |
|
| Q |
398 |
tgttacatggctttctttgccatctcttcgtccagtcttcatttcaaattttggacctcccaacta |
463 |
Q |
| |
|
|| ||| |||||||||| ||| |||| |||| |||||||||||| |||||||| |||||||| |
|
|
| T |
28635888 |
atttgcataactttctttgctatcccttcttccactcttcatttcaatgtttggaccacccaacta |
28635823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28636274 - 28636186
Alignment:
| Q |
1 |
cactgtggggtatagtctgtggaccaaattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaat |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
28636274 |
cactgtggggtatagtctgtggaccaaattcatgcaatgtactcttccaactgagtgtgctcctgatttaatcaaagtgaccagttaat |
28636186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28606489 - 28606406
Alignment:
| Q |
1 |
cactgtggggtatagtctgtggaccaaattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaa |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||| |
|
|
| T |
28606489 |
cactgtggggtatagtctgtggaccaaattcatgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaa |
28606406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 298 - 463
Target Start/End: Complemental strand, 28656495 - 28656330
Alignment:
| Q |
298 |
aaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatattgagtcattatgatttggaatgaattcttctaccat |
397 |
Q |
| |
|
|||||||||| || |||||||| || |||||||| ||||| ||||||| ||||||||||| || ||| ||||||| |||||||| ||||||| |||| |
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|
| T |
28656495 |
aaagagcaaccgtggcttcaacatcaacaccaatagcttggaaacgagtgagcactaaggacatggaggcattatggcttggaatggattcttccaccac |
28656396 |
T |
|
| Q |
398 |
tgttacatggctttctttgccatctcttcgtccagtcttcatttcaaattttggacctcccaacta |
463 |
Q |
| |
|
||||||| ||||||||||| ||| |||| |||| |||||||||||| |||||| ||||||||| |
|
|
| T |
28656395 |
cgttacatagctttctttgctatcccttcttccactcttcatttcaatgtttggaattcccaacta |
28656330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 28656761 - 28656682
Alignment:
| Q |
8 |
gggtatagtctgtggaccaaattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaatta |
87 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||||||| ||| ||||||||| ||||| |||||||||||| |
|
|
| T |
28656761 |
gggtatagtctgtggaccatatttatgcagtgtactcttcccactgaatgtgctcctgattcaatcatagtgaccaatta |
28656682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 807 - 854
Target Start/End: Complemental strand, 28604958 - 28604911
Alignment:
| Q |
807 |
tatatttatactcacctcgactatgcaatcatggaagagatttctaac |
854 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28604958 |
tatatttatactcaccttgactatgcaatcatggaagagatttctaac |
28604911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 26830645 - 26830606
Alignment:
| Q |
143 |
gacacgacacttgtaatcacatttaattatgtgatttttt |
182 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
26830645 |
gacacgacacttataattacatttaattatgtgatttttt |
26830606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 807 - 850
Target Start/End: Complemental strand, 28635336 - 28635293
Alignment:
| Q |
807 |
tatatttatactcacctcgactatgcaatcatggaagagatttc |
850 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
28635336 |
tatatttatactcacgttgactgtgcaatcatggaagagatttc |
28635293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 182
Target Start/End: Original strand, 426520 - 426555
Alignment:
| Q |
147 |
cgacacttgtaatcacatttaattatgtgatttttt |
182 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
426520 |
cgacacttgtaattacatttaattatgtgatttttt |
426555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 4118341 - 4118374
Alignment:
| Q |
149 |
acacttgtaatcacatttaattatgtgatttttt |
182 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
4118341 |
acacttgtaattacatttaattatgtgatttttt |
4118374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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