View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_high_2 (Length: 551)
Name: NF8633_high_2
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 476
Target Start/End: Complemental strand, 11462839 - 11462374
Alignment:
| Q |
11 |
aggaggagcacagacaaaccagagaaggtaaaaaactcgtcttctagtaatggtggcgatatgttggagaaattgagaatgacatttgatcataaagaga |
110 |
Q |
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| T |
11462839 |
aggaagagcacagacaaaccagagaaggtaaaaaactcgtcttccagtaatggtggtgatatgttggagaaattaagaatgacgtttgatcataaagaga |
11462740 |
T |
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| Q |
111 |
gatctcggagaagtgtcgactgtcatgaaaagtctcgaaaaagcgttgatcatcaattagaaaaaggaaggaagagcgttgacagactcgacagaataag |
210 |
Q |
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| T |
11462739 |
gatctcggagaagtgttgactgtcatgaaaagtctcgaaaaagtgttgatcatcaattagaaaaaggaaggaagagcgttgaccgactcgacagaataag |
11462640 |
T |
|
| Q |
211 |
gactggttaattcttcttgtattgaagttatattcgtgcgcacgggattggtcttttttgttaattttttatattggtctaattgctgtgtagtatacta |
310 |
Q |
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| T |
11462639 |
gactggttaattcttcttgtattgaagttatattcgtgcacacgggattggtcttttttgttaattttttatattggtctaattgctgtgtagtatactg |
11462540 |
T |
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| Q |
311 |
cactttggcttatgataactattggaattgaagaaaaggtttgatgttacaatgggattcacttttcattcagatgagatgatatatagtctgtgttttg |
410 |
Q |
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| T |
11462539 |
cactttggcttatgataactattggaattgaagaaaaggtttgatgttacaatgggattcacttttcattcagatgagatggtatatagtctgtgttttg |
11462440 |
T |
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| Q |
411 |
ctgaaaacataatgctggtaaaatcaaattttcactttaatatttctctcctttattttttctttt |
476 |
Q |
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| T |
11462439 |
ctgaaaacataatgctggtaaaatcaaattttcactttaatatttctctcctttattttttctttt |
11462374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 496 - 535
Target Start/End: Complemental strand, 11462356 - 11462317
Alignment:
| Q |
496 |
tggtcagagcttctattgtttaatcatttagtgacagata |
535 |
Q |
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| T |
11462356 |
tggtcagagcttctattgtttaatcatttagtgacagata |
11462317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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