View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_high_4 (Length: 413)
Name: NF8633_high_4
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 37027887 - 37027488
Alignment:
| Q |
1 |
aggtgggcttggaacatgttttgattggcttggaggtggcggcggcgatattgtgacaacggttttaggacttggtggtggtctaaaaacatcatgaggt |
100 |
Q |
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| T |
37027887 |
aggtgggcttggaacatgttttgatgggcttggaggtggcggcggcgacattgtaacaatggttttaggacttggtggtggtctaaaaacatcatgaggt |
37027788 |
T |
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| Q |
101 |
gggtttggaacaggtgaataaggtggtagagaggtaggttgtggagcaagtgaattgaaaggtggaagtggttgagaagaaggagtaccatatgaagaat |
200 |
Q |
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| T |
37027787 |
gggtttggaacaggtgaataaggtggtagagaggtaggttgtggagcaagtgaattgaaaggtggaagtggttgagaagaaggagtaccatatgaagaat |
37027688 |
T |
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| Q |
201 |
ctaagtctgagtagccaaatgatgaaaatttgagtttcttccatgatttgatggagtagcttctactacctcttccatgatttatagcatctgcaaattt |
300 |
Q |
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| T |
37027687 |
ctaagtctgagtagccaaatgatgaaaatttgagtttcttccatgatttgatggagtagcttctactacctcttccatgatttatagcatctgcaaattt |
37027588 |
T |
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| Q |
301 |
aacaaaagttacatatgttttataaattattacac-----aaactaaagttacatagatagattagtatatgaaataatcatataatttatatgcatggt |
395 |
Q |
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||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027587 |
aacaaaagttacatatgttttattaattactacacaaattaaactgaagttacatagatagattagtatatgaaataatcatataatttatatgcatggt |
37027488 |
T |
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