View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8633_high_5 (Length: 393)

Name: NF8633_high_5
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8633_high_5
NF8633_high_5
[»] chr8 (4 HSPs)
chr8 (17-380)||(8705415-8705778)
chr8 (248-380)||(14372181-14372312)
chr8 (305-380)||(8691135-8691210)
chr8 (121-230)||(8724029-8724137)
[»] chr2 (2 HSPs)
chr2 (46-111)||(42859912-42859977)
chr2 (56-109)||(38833505-38833558)
[»] chr7 (1 HSPs)
chr7 (45-108)||(28820799-28820862)
[»] chr3 (1 HSPs)
chr3 (55-109)||(32349574-32349628)
[»] chr5 (1 HSPs)
chr5 (45-112)||(35037679-35037746)
[»] chr1 (1 HSPs)
chr1 (60-109)||(47572996-47573045)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 8705778 - 8705415
Alignment:
Q  17 caaaaactttatctcaaaaacagtctttgtaaataaaagatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttgttccact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8705778 caaaaactttatctcaaaaacagtctttgtaaataaaagatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttgttccact 8705679  T
Q  117 aacaaatatgataccaaaagaaaaaagggttcaaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8705678 aacaaatatgataccaaaagaaaaaagggttcaaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaa 8705579  T
Q  217 attattaaatcctggataaactcatgttttgtcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaaca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8705578 attattaaatcctggataaactcatgttttgtcatactcatttaaataaataaataaaaactcaaataaactcatttaaagcctttattgtaacaaaaca 8705479  T
Q  317 aaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacacca 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8705478 aaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacacca 8705415  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 248 - 380
Target Start/End: Original strand, 14372181 - 14372312
Alignment:
Q  248 tcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatga 347  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||    
T  14372181 tcatactcatttaaataaataaataataactcaaataaactcatttaaaacctttattgtaacaaaacaaacctggt-atcttcaaaggtggtatcatga 14372279  T
Q  348 tattcatgaatcacccagctgcttttaacacca 380  Q
    |||||||||||||||| ||||||||||||||||    
T  14372280 tattcatgaatcacccggctgcttttaacacca 14372312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 8691210 - 8691135
Alignment:
Q  305 tgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacacca 380  Q
    ||||||||||||||||| || ||| | |||||||| |  |||||||||||||||||||||| ||||||||||||||    
T  8691210 tgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacacca 8691135  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 8724137 - 8724029
Alignment:
Q  121 aatatgataccaaaagaaaaaagggttcaaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaatta 220  Q
    ||||||| || |||||||||| ||||||||| | |||| ||||||| |||||||||||| | | ||||||| |||||||||| |||||| | ||||  ||    
T  8724137 aatatgacactaaaagaaaaaggggttcaaaat-caaattttcaaagaatgaatccaatcatcttcaaatttcagaacagcctatcagataagaaatata 8724039  T
Q  221 ttaaatcctg 230  Q
    | ||||||||    
T  8724038 tcaaatcctg 8724029  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 42859977 - 42859912
Alignment:
Q  46 taaataaaagatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttgtt 111  Q
    |||| ||| |||||||||| |||||||| | ||||||||||| ||||||| |||||||||||||||    
T  42859977 taaaaaaatgatcatgttctattgtttgcggtttgtgttttccttaatcttctattactagttgtt 42859912  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 38833558 - 38833505
Alignment:
Q  56 atcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttg 109  Q
    ||||||||||||||||||  ||||||||||||||||||||  | ||||||||||    
T  38833558 atcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttg 38833505  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 28820799 - 28820862
Alignment:
Q  45 gtaaataaaagatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagtt 108  Q
    ||||| ||| |||| ||||||||||||||||||||||||||| ||||||||  | |||||||||    
T  28820799 gtaaacaaacgatcgtgttccattgtttgtgatttgtgttttatttaatcttttgttactagtt 28820862  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 32349628 - 32349574
Alignment:
Q  55 gatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttg 109  Q
    ||||||||||||||||||| |||||||||| ||||||||||  | ||||||||||    
T  32349628 gatcatgttccattgtttgcgatttgtgttatctttaatcttttgttactagttg 32349574  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 35037679 - 35037746
Alignment:
Q  45 gtaaataaaagatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttgttc 112  Q
    ||||| ||| ||||| ||||||||||||  ||||| |||| |||||||||| || |||||||||||||    
T  35037679 gtaaacaaacgatcaagttccattgtttacgatttatgttatctttaatcttctgttactagttgttc 35037746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 47573045 - 47572996
Alignment:
Q  60 tgttccattgtttgtgatttgtgttttctttaatctgctattactagttg 109  Q
    ||||||||||||||| ||||||||||||||| ||||  | ||||||||||    
T  47573045 tgttccattgtttgttatttgtgttttctttgatcttttgttactagttg 47572996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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