View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_12 (Length: 367)
Name: NF8633_low_12
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 33193322 - 33193669
Alignment:
| Q |
1 |
aaagataaaaagtaatgataaaagaaggctattgcaacatatcagtacctgtaatttcttggggaaaagggaattctgtcaattgagctgattttgcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193322 |
aaagataaaaagtaatgataaaagaaggctattgcaacatatcagtacctgtaatttcttggggaaaagggaattctgtcaattgagctgattttgcatc |
33193421 |
T |
|
| Q |
101 |
ttccagtagctttatcagatttttatttccactcatccgagcttcatcaagcggggtatttccccatctgttttgtgtgaaatgaaaaagaacgataagt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193422 |
ttccagtagctttatcagatttttgtttccactcatccgagcttcatcaagcggggtatttccccatctgttttgtgtgaaatgaaaaagaacgataagt |
33193521 |
T |
|
| Q |
201 |
tttggaatgnnnnnnnnnnnncaataagccactatagcgtcgggcgtcagaattatagttgtagtagacacacgcaagtgaggatgnnnnnnnnnnnnaa |
300 |
Q |
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||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
33193522 |
tttggaatgaaaaagaaaaaacaataagcaactatagcgtcgggcgtcaggattatagttgtagtagacacacgcaagtgaggatgcacacacacacaaa |
33193621 |
T |
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| Q |
301 |
cctagcacactagtgaattaggccaattttaatttttcaagtgaaaac |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193622 |
cctagcacactagtgaattaggccaattttaatttttcaagtgaaaac |
33193669 |
T |
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