View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_15 (Length: 358)
Name: NF8633_low_15
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 113146 - 113469
Alignment:
| Q |
18 |
tcttcctaattttgtttaatacaccgtcaattcaaacagacaccaatgacatttatgaagggatatttagtcttaaccttaaatattggtttttggtaga |
117 |
Q |
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| T |
113146 |
tcttcgtaattttgtttaatacaccgtcaattcaaacagacaccaataacatttatgaagggatatttagtcttaaccttgaatattggtttttggtaga |
113245 |
T |
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| Q |
118 |
tagcaaacccttttggttttgacgacattataaaagataaaatatgaggcatgtcatgaaataggagatcaaatcaattgtgaataacaatcctcggaac |
217 |
Q |
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| T |
113246 |
tagcaaacccttttggttttgacgacattatgaaagataaaatatgaggcaagtcatgaaataggagatcaaatcaattgtgaataacaatcctcggaac |
113345 |
T |
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| Q |
218 |
tatccaaggattataaaccgttggtgttgagtagtattacaaaactaaagagaatgtttaatagagtggtggggaaattttaaagtaagactcgtgattg |
317 |
Q |
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| T |
113346 |
tatccaaggattataaaccattggtgttgagtagtattacaaaactaaagagaatgtttaatagagtggtggggaaattttaaagcaagactcgtgactg |
113445 |
T |
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| Q |
318 |
aagattgcaaacgaaattatgaag |
341 |
Q |
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| T |
113446 |
aagattgcaaacgaaattatgaag |
113469 |
T |
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