View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_16 (Length: 353)
Name: NF8633_low_16
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 45181394 - 45181702
Alignment:
| Q |
16 |
actcaggaggaggagttccaagtaaatcagtcatgatatccaattggttcttcgtatttgtcccaggaaacaatggcctcccagtaagcacttctgcaaa |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
45181394 |
actcaggaggaggagttccaagcaaatcagtcatgatatccaattggttcttcctatttgtccgaggaaacaatggcctcccagtaagcacttctgc-aa |
45181492 |
T |
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| Q |
116 |
atatgcatccaatgttccaaatatcaattccaggggtataccgcataagacaaggattataaattacatgc-----------atatttcaatacatcaag |
204 |
Q |
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| T |
45181493 |
atatgcatccaatgctccaaatatcaattccaggggtataccgcataagacaaggattataaattacatgcatatataatatatatttcaatacatcaag |
45181592 |
T |
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| Q |
205 |
tgtagtcaccttgatcttgtatcacacgtacacgtacacatacacaacccaagaaaatatgatgtcaaacaaaaaacttacttttgtgaaaaaagaacca |
304 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45181593 |
tgtagtcaccttgatcttgtatcac----------acacatacacaacccaagaaaatatgatgtcaaacaaaaaacttacttttgtgaaaaaagaacca |
45181682 |
T |
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| Q |
305 |
catagttcaggtgcacggta |
324 |
Q |
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|||||||||||||||||||| |
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| T |
45181683 |
catagttcaggtgcacggta |
45181702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 45174502 - 45174690
Alignment:
| Q |
16 |
actcaggaggaggagttccaagtaaatcagtcatgatatccaattggttcttcgtatttgtcccaggaaacaatggcctcccagtaagcacttctgcaaa |
115 |
Q |
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| T |
45174502 |
actcaggaggaggagtgccaagcaaatcagtcatgatatccaattgatgcaccacatttttcccaggaaacaatggcctcccagtaagcatttctgcaaa |
45174601 |
T |
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| Q |
116 |
atatgcatccaatgttccaaatatcaattccaggggtataccgcataagacaaggattataaattacatgcatatttcaatacatcaagt |
205 |
Q |
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| T |
45174602 |
-tatgcatccaatgctccaaatatcaattccaggtgtatactgcataagaaagggaatataaattacatacatatttcaatacatcaagt |
45174690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 45174745 - 45174805
Alignment:
| Q |
277 |
aaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacctagttgca |
337 |
Q |
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| T |
45174745 |
aaaacttacttttgagaaaaaagaaccacatagttcaggtgcacggtaccacctagttgca |
45174805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 29961472 - 29961651
Alignment:
| Q |
18 |
tcaggaggaggagttccaagtaaatcagtcatgatatccaattggttcttcgtatttgtcccaggaaacaatggcctcccagtaagcacttctgcaaaat |
117 |
Q |
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|||| ||||||||| ||||| ||||||||||||| || || |||| | | |||| ||||||||||||||||| | ||| |||||| ||||||||| | |
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| T |
29961472 |
tcagtaggaggagtaccaagcaaatcagtcatgaggtctaactggtgcaccacatttttcccaggaaacaatggcttgccactaagcatttctgcaaa-t |
29961570 |
T |
|
| Q |
118 |
atgcatccaatgttccaaatatcaattccaggggtataccgcataagacaaggattataaattacatgcatatttcaatac |
198 |
Q |
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|||||||||||| ||||||||||||| | || |||||| ||| |||||||| ||| ||||||||| ||||||||||||| |
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| T |
29961571 |
atgcatccaatgctccaaatatcaatcgctggagtatactgcaaaagacaagaatttgaaattacatacatatttcaatac |
29961651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 29961966 - 29962014
Alignment:
| Q |
281 |
cttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacc |
329 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
29961966 |
cttacttttgagaaaaaagaaccacatagttcaggtgcacgataccacc |
29962014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 30814788 - 30814718
Alignment:
| Q |
78 |
ccaggaaacaatggcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatcaattccagg |
149 |
Q |
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||||||||||||||| | || ||||||||||| |||||| ||||| |||||| |||| ||||||||| |||| |
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| T |
30814788 |
ccaggaaacaatggctttcctgtaagcacttccgcaaaa-atgcaaccaatgctccatatatcaattgcagg |
30814718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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