View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8633_low_17 (Length: 343)

Name: NF8633_low_17
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8633_low_17
NF8633_low_17
[»] chr1 (6 HSPs)
chr1 (28-327)||(44613470-44613769)
chr1 (33-277)||(44145784-44146031)
chr1 (28-277)||(44794569-44794818)
chr1 (38-309)||(17810745-17811016)
chr1 (33-327)||(11543515-11543809)
chr1 (33-295)||(35899879-35900138)
[»] scaffold0061 (1 HSPs)
scaffold0061 (36-327)||(28220-28511)
[»] scaffold0017 (2 HSPs)
scaffold0017 (36-327)||(170281-170572)
scaffold0017 (33-277)||(181418-181662)
[»] chr3 (2 HSPs)
chr3 (38-305)||(26729039-26729306)
chr3 (36-228)||(8343523-8343715)
[»] chr5 (1 HSPs)
chr5 (71-327)||(29506644-29506900)
[»] chr2 (2 HSPs)
chr2 (33-132)||(29227947-29228046)
chr2 (33-132)||(29341246-29341345)
[»] chr6 (2 HSPs)
chr6 (208-253)||(11831910-11831955)
chr6 (208-253)||(11930040-11930085)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 28 - 327
Target Start/End: Complemental strand, 44613769 - 44613470
Alignment:
Q  28 agtagcagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatgg 127  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||| |  ||||  || | |||||||||||||||||||||    
T  44613769 agtaacagagatttgaaggtaaacttccatagaagttattggatcgaaggcttaagatttctaaattttgtaagctatctccaatccatgaaggtaatgg 44613670  T
Q  128 accatgaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaa 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||    
T  44613669 accatgaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaaagaggaaggaagttgtccactcaaactattatttcttaaa 44613570  T
Q  228 accaaagcctccatgttaacaagggtacccgttgagatgggaatctttccccataatttgttatttcttaagtcaacaaattttaacgaggttagattat 327  Q
    | |||||||||||| ||   |||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44613569 atcaaagcctccatatttgtaagggtacccattgagaatggaatctttccccataatttgttatttcttaagtcaacaaattttaacgaggttagattat 44613470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 33 - 277
Target Start/End: Complemental strand, 44146031 - 44145784
Alignment:
Q  33 cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaag---gtaatggac 129  Q
    |||||||||||||||| |||||||| ||||||||| ||| | ||||||||||||||||||||||||| ||| | ||||||||||||||   ||||  |||    
T  44146031 cagagatttgaaggtagacttccattgaagttattgaattggaggcttaagattactaattggtgtaaactatctccaatccatgaagaaggtaacagac 44145932  T
Q  130 catgaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaac 229  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  44145931 catgaaacatattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattatcatttcttaaaat 44145832  T
Q  230 caaagcctccatgttaacaagggtacccgttgagatgggaatctttcc 277  Q
    ||||||||||||||||  ||||| |||| ||||||| |||||||||||    
T  44145831 caaagcctccatgttagaaagggcacccattgagattggaatctttcc 44145784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 44794569 - 44794818
Alignment:
Q  28 agtagcagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatgg 127  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||| |  ||||  || | |||||||||||||||||||||    
T  44794569 agtaacagagatttgaaggtaaacttccatagaagttattggatcgaaggcttaagatttctaaattttgtaagctatctccaatccatgaaggtaatgg 44794668  T
Q  128 accatgaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||    
T  44794669 accatgaaacttattttctccaagatccaacaaagccaacttgtttgagaaattcttcaaagaggaaggaagttgtccactcaaactattatttcttaaa 44794768  T
Q  228 accaaagcctccatgttaacaagggtacccgttgagatgggaatctttcc 277  Q
    ||||||   |||||| || |||||| |||| ||||||  |||||||||||    
T  44794769 accaaattgtccatgctagcaagggaacccattgagaatggaatctttcc 44794818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 38 - 309
Target Start/End: Original strand, 17810745 - 17811016
Alignment:
Q  38 atttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaac 137  Q
    ||||||||||| |||||||   || ||||| |||||||| |||||||||||||||||||||| | | | ||||| |||||||||||||||||||||||||    
T  17810745 atttgaaggtatacttccacttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccatgaaggtaatggaccatgaaac 17810844  T
Q  138 ttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagcct 237  Q
    ||||||||||| || ||||||||||||| |||||  ||||| ||||||||||| |||| ||||||||||||||||  |||||||||||||| ||||||||    
T  17810845 ttattttctccgaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccattatttcttaaaatcaaagcct 17810944  T
Q  238 ccatgttaacaagggtacccgttgagatgggaatctttccccataatttgttatttcttaagtcaacaaatt 309  Q
    ||||||||||||||| |||| |||||| ||||||||||||  | || ||||||||||| | |||||||||||    
T  17810945 ccatgttaacaagggcacccattgagaagggaatctttcctgacaacttgttatttctgaggtcaacaaatt 17811016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 33 - 327
Target Start/End: Original strand, 11543515 - 11543809
Alignment:
Q  33 cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat 132  Q
    |||||||||||||||| |||||||  |||||||||   || ||||||||||||||||| ||| |||| |||   |||||||||||||||||| |||||||    
T  11543515 cagagatttgaaggtatacttccactgaagttattggctcaaaggcttaagattactagttgttgtaaactgcctccaatccatgaaggtaacggaccat 11543614  T
Q  133 gaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaa 232  Q
    ||||| ||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  11543615 gaaacgtattttctccaaggtccaagatagccaacttgtctgagcaattcttcaatgaagaaggaagttgtccactcaaactattatttcttagaaccaa 11543714  T
Q  233 agcctccatgttaacaagggtacccgttgagatgggaatctttccccataatttgttatttcttaagtcaacaaattttaacgaggttagattat 327  Q
    | | | |||||||||||||| |||| | || |  || ||||||||| | || |||||||| || | ||||||| | | || |||||||| |||||    
T  11543715 atcttgcatgttaacaagggcacccatcgacaatgggatctttcccgacaacttgttattactgaggtcaacatagtatagcgaggttaaattat 11543809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 33 - 295
Target Start/End: Complemental strand, 35900138 - 35899879
Alignment:
Q  33 cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat 132  Q
    |||||||||||||||| |||||||| ||| ||||| || |||||||||||||||| ||||||||| | ||| | |||||||||| |||||||||||||||    
T  35900138 cagagatttgaaggtagacttccattgaatttattgaaccgaaggcttaagattattaattggtgcaaactatctccaatccataaaggtaatggaccat 35900039  T
Q  133 gaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaa 232  Q
    ||||  ||||||||||||||||||| ||||||||   ||||||||||||||| ||||| |||||||||||||| | ||||||||||||| |||||  |||    
T  35900038 gaaatatattttctccaagatccaataaagccaa---gtttgagcaattctttaatgaggaaggaagttgtccccccaaattattatttgttaaactcaa 35899942  T
Q  233 agcctccatgttaacaagggtacccgttgagatgggaatctttccccataatttgttatttct 295  Q
    ||||||||  |||  ||||| |||| |||||| ||||||||||||  | || |||||||||||    
T  35899941 agcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttatttct 35899879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 36 - 327
Target Start/End: Original strand, 28220 - 28511
Alignment:
Q  36 agatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaa 135  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||  |||   | | |||||||||||||||||||||||| ||||    
T  28220 agatttgaaggtagacttccattgaagttattgaatcgaaggcttaagattactaattgtcgtaagttgtctccaatccatgaaggtaatggaccttgaa 28319  T
Q  136 acttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagc 235  Q
    || ||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||    
T  28320 acatattttctccaagatccaacatagccaacttgtttgagaaattcttcaaagaggaaggaagttggccactcaaactattatttcttaaaaccaaagc 28419  T
Q  236 ctccatgttaacaagggtacccgttgagatgggaatctttccccataatttgttatttcttaagtcaacaaattttaacgaggttagattat 327  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| || | ||||||||||||||| |||||||||||||    
T  28420 ctccatgttaacaagggcacccattgagatgggaatttttccccataatttgttattgctgaggtcaacaaattttaatgaggttagattat 28511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 36 - 327
Target Start/End: Complemental strand, 170572 - 170281
Alignment:
Q  36 agatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaa 135  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||  |||   | | |||||||||||||||||||||||| ||||    
T  170572 agatttgaaggtagacttccattgaagttattgaatcgaaggcttaagattactaattgtcgtaagttgtctccaatccatgaaggtaatggaccttgaa 170473  T
Q  136 acttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagc 235  Q
    || ||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||    
T  170472 acatattttctccaagatccaacatagccaacttgtttgagaaattcttcaaagaggaaggaagttggccactcaaactattatttcttaaaaccaaagc 170373  T
Q  236 ctccatgttaacaagggtacccgttgagatgggaatctttccccataatttgttatttcttaagtcaacaaattttaacgaggttagattat 327  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| || | ||||||||||||||| |||||||||||||    
T  170372 ctccatgttaacaagggcacccattgagatgggaatttttccccataatttgttattgctgaggtcaacaaattttaatgaggttagattat 170281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 33 - 277
Target Start/End: Complemental strand, 181662 - 181418
Alignment:
Q  33 cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat 132  Q
    |||||||||||||| | | |||||| |||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  181662 cagagatttgaaggaagaattccattgaagttgttgaatcgaaggcttaagattactaattggtgtaaactttgtccaatccatgcaggtaatggaccat 181563  T
Q  133 gaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaa 232  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  | ||||||||||| ||||||| | |||||||||||||||||||    
T  181562 gaaacttattttctccaagatccaacagagccaacttgttttagcaattcttcaaacaggaaggaagttgaccactcatactattatttcttaaaaccaa 181463  T
Q  233 agcctccatgttaacaagggtacccgttgagatgggaatctttcc 277  Q
    | ||||||| ||   |||||||||| |||||| ||||||||||||    
T  181462 aacctccatatttgtaagggtacccattgagaagggaatctttcc 181418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 305
Target Start/End: Complemental strand, 26729306 - 26729039
Alignment:
Q  38 atttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaac 137  Q
    ||||||||||| |||||||||||||||||| || ||||||||||| |||| ||||||  ||| ||||| ||||||||||| |||||||||||||||||||    
T  26729306 atttgaaggtatacttccatagaagttattgaaccgaaggcttaatattattaattgccgtaaactctctccaatccatgcaggtaatggaccatgaaac 26729207  T
Q  138 ttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagcct 237  Q
     ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||| ||||||||    
T  26729206 atattttctccaaggtccaacaaagccaacttgtttgaacaattcttcaatgaggaagtaagttgtccactcaaactattatttcttaaaatcaaagcct 26729107  T
Q  238 ccatgttaacaagggtacccgttgagatgggaatctttccccataatttgttatttcttaagtcaaca 305  Q
    | ||||||||||| | |||| |||||   ||||| |||||||| || |||||||| || |||||||||    
T  26729106 ctatgttaacaagagcacccattgaggatggaatatttccccacaacttgttattgctcaagtcaaca 26729039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 36 - 228
Target Start/End: Complemental strand, 8343715 - 8343523
Alignment:
Q  36 agatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaa 135  Q
    ||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||||||| ||||   | | |||||||||||||||||||||||||||||    
T  8343715 agatttgaaggtatacttccattgaagttattgactcgaatgcttaagattactaattgatgtaagttgtctccaatccatgaaggtaatggaccatgaa 8343616  T
Q  136 acttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaa 228  Q
    |||||||||||||||  |||||||||| |||||| ||||||||||| ||||| || ||||||||||||||||||||| ||||| |||||||||    
T  8343615 acttattttctccaatttccaacaaagtcaacttttttgagcaatttttcaaggaggaaggaagttgtccactcaaactattacttcttaaaa 8343523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 327
Target Start/End: Original strand, 29506644 - 29506900
Alignment:
Q  71 tcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaacttattttctccaagatccaacaaagccaacttg 170  Q
    ||||||||||||||||| ||| ||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| |||    
T  29506644 tcgaaggcttaagattattaactggtgtaaactgtctccaatccatgaaggtattggaccatgaaacatattttctccaaggtccaacaaagccaatttg 29506743  T
Q  171 tttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaaaaccaaagcctccatgttaacaagggtacccgttgagatgggaa 270  Q
    ||||| ||||||||||| || ||||||| ||||||||||||| | ||||||||||||| |||||||||||| |||||||| | |||| ||||||  ||||    
T  29506744 tttgaacaattcttcaaggaggaaggaaattgtccactcaaactgttatttcttaaaatcaaagcctccatattaacaagagcacccattgagaatggaa 29506843  T
Q  271 tctttccccataatttgttatttcttaagtcaacaaattttaacgaggttagattat 327  Q
    |||| ||| | || |||||||| || |  |||||||| | ||| |||||||||||||    
T  29506844 tcttacccgacaagttgttattgctcagttcaacaaactgtaatgaggttagattat 29506900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 29227947 - 29228046
Alignment:
Q  33 cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat 132  Q
    ||||||||||||| || |||||||| |||| | ||| |||||||||||||||||| | ||   |||||||| | |||||||||| |||| |||| |||||    
T  29227947 cagagatttgaagctagacttccattgaagctgttagatcgaaggcttaagattagtgatccttgtagactgtctccaatccataaaggcaatgcaccat 29228046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 29341246 - 29341345
Alignment:
Q  33 cagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat 132  Q
    ||||||||||||| || |||||||| |||| | ||| |||||||||||||||||| | ||   |||||||| | |||||||||| |||| |||| |||||    
T  29341246 cagagatttgaagctagacttccattgaagctgttagatcgaaggcttaagattagtgatccttgtagactgtctccaatccataaaggcaatgcaccat 29341345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 11831910 - 11831955
Alignment:
Q  208 tcaaattattatttcttaaaaccaaagcctccatgttaacaagggt 253  Q
    ||||| |||||||||||||||||||||| ||||  |||||||||||    
T  11831910 tcaaactattatttcttaaaaccaaagcttccactttaacaagggt 11831955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 11930085 - 11930040
Alignment:
Q  208 tcaaattattatttcttaaaaccaaagcctccatgttaacaagggt 253  Q
    ||||| |||||||||||||||||||||| ||||  |||||||||||    
T  11930085 tcaaactattatttcttaaaaccaaagcttccaatttaacaagggt 11930040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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