View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_18 (Length: 326)
Name: NF8633_low_18
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 42669911 - 42669608
Alignment:
| Q |
13 |
gaaagaatggaaacaaaagcaataattagtaaatattataataacctaatgtccggtacaactgatctgaattttcatcttagaccnnnnnnnctaacac |
112 |
Q |
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| T |
42669911 |
gaaagaacggaaacaaaagcaataattagtaaatattttaataacctaatgtccggtacaactgatctgaattttcatcttagaccaaaaaaactaacac |
42669812 |
T |
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| Q |
113 |
attaccttgagttgcaagtatcagaaagagaaaagcaagcagattgaagactggaatttacatctacagacatgcccaacctctgcaggtgatatcgtgt |
212 |
Q |
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| T |
42669811 |
attaccttgagttgcaagtatcagaaagagaaaagcaagcagattgaagactggaatttacatctacagacatgcccaacctctgcaggtgatatcgtgt |
42669712 |
T |
|
| Q |
213 |
aacctcagcccggatttttcttctatctattactaatgctctcaaaccctggaactcagaggccaaagggttattcttctgccacttctcatccacaggt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42669711 |
aacctcagcccggatttttcttctatctattactaatgctctcaaaccctggaactcagaggccaaagggttattcttctgccacttctcatccacagat |
42669612 |
T |
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| Q |
313 |
tctg |
316 |
Q |
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|||| |
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| T |
42669611 |
tctg |
42669608 |
T |
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