View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_19 (Length: 321)
Name: NF8633_low_19
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 12761637 - 12761936
Alignment:
| Q |
1 |
cagagtcactatttccattgttgttttgcttgcttcccttatcacaaatgttgttgcaaccaaagaaacaacaatatcagatgttgatcttcttgaattt |
100 |
Q |
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| T |
12761637 |
cagagtcactatttccattgttgttttgcttgcttcccttatcacaaatgttgttgcaaccaaagaaacaacattatcagatgttgatcttcttgaattt |
12761736 |
T |
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| Q |
101 |
cctcttaacttagagtacttggaagctgaattctttttatttggatcatatggtcatggattggatacagtggctccagagttagcagatggtggaccct |
200 |
Q |
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| T |
12761737 |
cctcttaatttagagtacttggaggctgaattctttttatttggatcatttggtcatggattggatgcagtggctccagagttagcagatggtgggccct |
12761836 |
T |
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| Q |
201 |
ctcctattggtgccaaagtggccaaactgaaggaccgtaagatcaagcaaatcatatttgaatttggtttacaagaagttggacatttaaggttatctct |
300 |
Q |
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| T |
12761837 |
ctcctattggtgccaaagtggccaaactgaaggatcgtaagatcaagcaaatcatatttgaatttggtttacaagaagttggacatttaaggttttctct |
12761936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 12770935 - 12771087
Alignment:
| Q |
77 |
tcagatgttgatcttcttgaatttcctcttaacttagagtacttggaagctgaattctttttatttggatcatatggtcatggattggatacagtggctc |
176 |
Q |
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||||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
12770935 |
tcagatgatgatcttcttgaatttcctcttaatttagaatatttggaagctgaattctttttatttggatcattaggtcatggattggatgtagttgctc |
12771034 |
T |
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| Q |
177 |
cagagttagcagatggtggaccctctcctattggtgccaaagtggccaaactg |
229 |
Q |
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| T |
12771035 |
cagagttagcagagggtggccctcctcctattggggccaaaatggccaaactg |
12771087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 12782912 - 12783059
Alignment:
| Q |
77 |
tcagatgttgatcttcttgaatttcctcttaacttagagtacttggaagctgaattctttttatttggatcatatggtcatggattggatacagtggctc |
176 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
12782912 |
tcagatgttgatcttctcgaatttcctcttaatttagagtacttggaggctgaattctttttatttggatcattaggtcatggattggatgtagttgctc |
12783011 |
T |
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| Q |
177 |
cagagttagcagatggtggaccctctcctattggtgccaaagtggcca |
224 |
Q |
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| T |
12783012 |
cagagttagcagagggtggccctcctcctattggggcaaaagtggcca |
12783059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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