View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8633_low_20 (Length: 311)

Name: NF8633_low_20
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8633_low_20
NF8633_low_20
[»] scaffold0140 (1 HSPs)
scaffold0140 (12-297)||(35874-36159)
[»] chr1 (4 HSPs)
chr1 (9-297)||(23573177-23573466)
chr1 (69-168)||(31815281-31815380)
chr1 (25-130)||(7384449-7384554)
chr1 (25-127)||(9419362-9419464)
[»] chr4 (4 HSPs)
chr4 (1-297)||(13507847-13508143)
chr4 (14-297)||(13507120-13507402)
chr4 (27-129)||(42225735-42225837)
chr4 (67-156)||(28427317-28427406)
[»] chr7 (3 HSPs)
chr7 (27-193)||(28557055-28557221)
chr7 (29-193)||(707652-707816)
chr7 (25-168)||(41385307-41385450)
[»] chr2 (3 HSPs)
chr2 (25-154)||(31559072-31559201)
chr2 (69-168)||(22059674-22059773)
chr2 (25-168)||(42827733-42827876)
[»] chr6 (5 HSPs)
chr6 (25-222)||(1134480-1134676)
chr6 (69-168)||(7799724-7799823)
chr6 (25-168)||(19597477-19597620)
chr6 (69-166)||(19401637-19401734)
chr6 (111-168)||(19581083-19581140)
[»] chr3 (5 HSPs)
chr3 (67-156)||(5386744-5386833)
chr3 (67-155)||(5386034-5386122)
chr3 (118-168)||(31200070-31200120)
chr3 (257-295)||(51253126-51253164)
chr3 (25-154)||(34594638-34594767)
[»] scaffold0129 (1 HSPs)
scaffold0129 (69-168)||(3768-3867)
[»] chr8 (2 HSPs)
chr8 (25-168)||(17706976-17707118)
chr8 (98-193)||(36900336-36900431)


Alignment Details
Target: scaffold0140 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 35874 - 36159
Alignment:
Q  12 ttttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaa 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35874 ttttcatctcatccaatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaa 35973  T
Q  112 attcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacacttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35974 attcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttggcacacttt 36073  T
Q  212 aatgtaattaaaatatgtgtatggatgattttgtttttagggtcctaatagttgcaagttgttcatatgggatgatgaaattgatg 297  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36074 aatgtaattaaaagatgtgtatggttgattttgtttttagggtcctaatagttgcaagttgttcatatgggatgatgaaattgatg 36159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 23573177 - 23573466
Alignment:
Q  9 aatttttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatct 108  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23573177 aatttttcatatcacccaatgtctactcattccatgaccaattcatcttcaactgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatct 23573276  T
Q  109 caaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacac 208  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |    
T  23573277 caaattcaactgagaatcctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgattgttgggtaatttcgcaccc 23573376  T
Q  209 tttaatgtaattaaaatatgtgtatggatgattttg-tttttagggtcctaatagttgcaagttgttcatatgggatgatgaaattgatg 297  Q
    ||||||||||   ||| ||||| |||| | |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23573377 tttaatgtaaaataaaaatgtggatggtttattttgttttttagggttctaatagttgcaagttgttcatatgggatgatgaaattgatg 23573466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 31815380 - 31815281
Alignment:
Q  69 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||||||| | |||| ||||||    
T  31815380 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatgatgagtt 31815281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 7384554 - 7384449
Alignment:
Q  25 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 124  Q
    ||||||||||||||| |||| | |||||||||||||||||  ||||||| ||||  ||||||||||  |||| |||||| ||||| ||||||| | | ||    
T  7384554 caatgtcttctcatttcattgctaattcatcttcaattgagttgcctatatgtgcgtgcaacaaaattatgaggatgttcatctccaattcaaataaaaa 7384455  T
Q  125 ccctaa 130  Q
    ||||||    
T  7384454 ccctaa 7384449  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 9419464 - 9419362
Alignment:
Q  25 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 124  Q
    |||||||||||||||||||| |  | ||||| ||||||||  | |||||   ||||| |||||||| |||||||||||| ||||| ||||||  ||||||    
T  9419464 caatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatctccaattcacatgacaa 9419365  T
Q  125 ccc 127  Q
    |||    
T  9419364 ccc 9419362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 13508143 - 13507847
Alignment:
Q  1 ttctgccaaatttttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagat 100  Q
    ||||| ||| || ||||||||||||| ||||||||||||||||||| ||||||| ||||||| |  ||||||| ||||||||||||||| ||||||||||    
T  13508143 ttctgtcaatttcttcatctcacccagtgtcttctcattccattactaattcatattcaattaagttgcctatatgtggttgcaacaaagcaatgaagat 13508044  T
Q  101 gtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattt 200  Q
    ||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13508043 gtttatccccaattcaattgacaaccctaaaatgagataatggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgtgtattt 13507944  T
Q  201 tcgcacactttaatgtaattaaaatatgtgtatggatgattttgtttttagggtcctaatagttgcaagttgttcatatgggatgatgaaattgatg 297  Q
    ||||||| |||||| |||||||||||| | ||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  13507943 tcgcacagtttaatataattaaaatatatatatggttgattttgtttttagggtgctaatagttgtaagttgttcatatgggatgatgaaattgatg 13507847  T

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Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 13507120 - 13507402
Alignment:
Q  14 ttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaat 113  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||||||||| ||||||| ||||||||||| |||    
T  13507120 ttcatctctcccaatgtcttcttattccattactaattcatcttcaattgag-tgcctatttgtggttgcaacaaagcaatgaatatgtttatctccaat 13507218  T
Q  114 tcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacactttaa 213  Q
    | | |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  13507219 ttagttgacaaccctaaaagaagatactggaaatacccaacatttatggcgagttattttgtataatactttgtttgttgtgtattttcgcacagtttaa 13507318  T
Q  214 tgtaattaaaatatgtgtatggatgattttgtttttagggtcctaatagttgcaagttgttcatatgggatgatgaaattgatg 297  Q
    ||||||||||| |||| ||||| |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  13507319 tgtaattaaaaaatgtatatggttgattttgttattagggtgctaatagttgtaagttgttcatatgggatgatgaaattgatg 13507402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 42225735 - 42225837
Alignment:
Q  27 atgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaacc 126  Q
    |||||||||||||||||| | |||| |||||||||| || ||| ||| ||||||||||||||||  |||| |||||| ||||| ||||||| ||| ||||    
T  42225735 atgtcttctcattccattgctaattgatcttcaatttaattgcttatatgtggttgcaacaaaatcatgaggatgttcatctccaattcaaatgaaaacc 42225834  T
Q  127 cta 129  Q
    |||    
T  42225835 cta 42225837  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 28427317 - 28427406
Alignment:
Q  67 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat 156  Q
    ||||| |||||||||||||||||||   || |||||| || || ||||||||||| |||||||||| |||||| ||||||||||||||||    
T  28427317 tgcctttttgtggttgcaacaaaaccgcgaggatgttcatatccaattcaattgaaaaccctaaaaagagatattggaaatgcccaacat 28427406  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 28557221 - 28557055
Alignment:
Q  27 atgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaacc 126  Q
    |||||||||||||||||| | ||| |||| ||||||||| ||||||| ||||| ||||||||||  || | |||||| ||||| |||| || ||| || |    
T  28557221 atgtcttctcattccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaatc 28557122  T
Q  127 ctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg 193  Q
    ||||||||||||| |||||||| ||||| |||| ||||||||  ||  ||||||||| || ||||||    
T  28557121 ctaaaaggagatattggaaatgtccaacctttacggtgagttcgttgttataatactatgattgttg 28557055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 707816 - 707652
Alignment:
Q  29 gtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccct 128  Q
    |||||||| ||||||| | ||| |||| ||||||||| ||||||| ||||| ||||||||||  || | |||||| ||||| |||| || ||| ||||||    
T  707816 gtcttctcgttccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaaccct 707717  T
Q  129 aaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg 193  Q
    ||||||||||| |||||||| ||||| |||| |||| |||  ||  ||||||||| |||||||||    
T  707716 aaaaggagatattggaaatgtccaacctttacggtgtgttcgttgttataatactatgtttgttg 707652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 41385450 - 41385307
Alignment:
Q  25 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 124  Q
    ||||||||||| ||||||||||  | ||||| || | |||  | ||||| ||||||||||||||||  ||||  ||||| || || |||||| |||||||    
T  41385450 caatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcacttgacaa 41385351  T
Q  125 ccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    ||||||||||||||| ||||||| |||||| | ||| |||||||    
T  41385350 ccctaaaaggagatattggaaatacccaacctatattgtgagtt 41385307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 31559201 - 31559072
Alignment:
Q  25 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 124  Q
    |||||||||||||||||||| |  | ||||| ||||||||  ||||||| |||||||||||||||| ||||| |||||| ||||| |||| |  | ||||    
T  31559201 caatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctccaatttatattacaa 31559102  T
Q  125 ccctaaaaggagatactggaaatgcccaac 154  Q
    |||||||| |||||| ||||||||||||||    
T  31559101 ccctaaaacgagatattggaaatgcccaac 31559072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 22059773 - 22059674
Alignment:
Q  69 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  22059773 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt 22059674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 42827733 - 42827876
Alignment:
Q  25 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 124  Q
    ||||||||||| ||||||||||  | ||||| || | |||  | ||||| || |||||||||||||  ||||  ||||| || || |||||| |||||||    
T  42827733 caatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgcggttgcaacaaaattatgagaatgttcatatccaattcacttgacaa 42827832  T
Q  125 ccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    ||||||||||||||| ||||||| | |||| | |||||||||||    
T  42827833 ccctaaaaggagatattggaaatacacaacctatatggtgagtt 42827876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 1134480 - 1134676
Alignment:
Q  25 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 124  Q
    ||||||||||||||||||||    | ||||| |||| | |  ||||||| ||||||||||| ||||  |||| |||||| ||||| ||||||  ||||||    
T  1134480 caatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgcaaaaaaattatgaggatgttcatctccaattcacatgacaa 1134579  T
Q  125 ccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaa 222  Q
    || ||||| |||||| |||||||||||||| |||||||||| |   ||  ||||||| ||||||| |||  ||||||| |||| ||||||||||||||    
T  1134580 cc-taaaaagagatattggaaatgcccaacctttatggtgaatgtgttgttataatagtttgttttttgtttattttcccacattttaatgtaattaa 1134676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 7799823 - 7799724
Alignment:
Q  69 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    ||||| ||||||||||||||||  ||||| ||||| || || ||||||| ||  |||||||||||||||||||||||||||||||| | |||||||||||    
T  7799823 cctatgtgtggttgcaacaaaatcatgaaaatgttcatatccaattcaagtgcaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt 7799724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 19597620 - 19597477
Alignment:
Q  25 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 124  Q
    ||||||||||| ||||||||||  | ||||| || | |||  | ||||| ||||||||||||||||  ||||  ||||| || || |||||| |||||||    
T  19597620 caatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcagttgacaa 19597521  T
Q  125 ccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    ||||||||||||||| || |||| |||||| | |||||||||||    
T  19597520 ccctaaaaggagatattgaaaatacccaacctatatggtgagtt 19597477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 19401734 - 19401637
Alignment:
Q  69 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgag 166  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||| ||| | |||||||||    
T  19401734 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacgtgaaaaccctaaaaggagatactggaaatgccaaacttatatggtgag 19401637  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 19581140 - 19581083
Alignment:
Q  111 aattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||| | |||||| ||||    
T  19581140 aattcaattgacaactctaaaaggagatattggaaatacccaacctgtatggttagtt 19581083  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 5386833 - 5386744
Alignment:
Q  67 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat 156  Q
    ||||||||||  ||||||||||||| |||| |||||| || || ||||||||||| |||||||||||||| || ||||||||||||||||    
T  5386833 tgcctatttgctgttgcaacaaaaccatgaggatgttaatatccaattcaattgaaaaccctaaaaggaggtattggaaatgcccaacat 5386744  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 5386034 - 5386122
Alignment:
Q  67 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaaca 155  Q
    ||||||||||||||| |||  |||| |||| |||||| || |  ||||||||||| ||| ||||||||||||| |||||||||||||||    
T  5386034 tgcctatttgtggtttcaattaaaccatgaggatgttcatatgcaattcaattgaaaactctaaaaggagatattggaaatgcccaaca 5386122  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 31200070 - 31200120
Alignment:
Q  118 ttgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    |||||||||||||||||||||| ||||||| |||||| | |||||||||||    
T  31200070 ttgacaaccctaaaaggagatattggaaatacccaacctatatggtgagtt 31200120  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 51253126 - 51253164
Alignment:
Q  257 taatagttgcaagttgttcatatgggatgatgaaattga 295  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  51253126 taatagttgcaggatgttcatatgggatgatgaaattga 51253164  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 34594638 - 34594767
Alignment:
Q  25 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 124  Q
    ||||||||||||||| |||| |  |  |||| ||||||||  ||||||| | | ||||||| |||| || || |||||| ||||| ||||||  ||||||    
T  34594638 caatgtcttctcatttcatttctcaaccatcatcaattgagttgcctatatatagttgcaataaaataacgaggatgttcatctccaattcacatgacaa 34594737  T
Q  125 ccctaaaaggagatactggaaatgcccaac 154  Q
     |||||||| ||||| || ||||| |||||    
T  34594738 tcctaaaagaagatattgaaaatgtccaac 34594767  T

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Target: scaffold0129 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 3867 - 3768
Alignment:
Q  69 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  3867 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt 3768  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 17707118 - 17706976
Alignment:
Q  25 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 124  Q
    |||||||||||| ||||||| | ||| |||| ||||||||| | ||||| |||||  |||||||||  || | |||||| ||||| |||| || ||| ||    
T  17707118 caatgtcttctccttccattgctaatacatcatcaattgaattacctatatgtgggcgcaacaaaatcataaggatgttcatctccaatttaaatgaaaa 17707019  T
Q  125 ccctaaaaggagatactggaaatgcccaacatttatggtgagtt 168  Q
    |||| |||| ||||| |||||||| ||||| |||| ||||||||    
T  17707018 ccct-aaagaagatattggaaatgtccaacctttacggtgagtt 17706976  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 36900336 - 36900431
Alignment:
Q  98 gatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg 193  Q
    |||||| ||||| |||| || ||| ||||||||||||||||| || ||||| ||||| |||| ||||||||  ||  ||||||||| |||||||||    
T  36900336 gatgttcatctccaatttaaatgaaaaccctaaaaggagatattgaaaatgtccaacctttacggtgagttcgttgttataatactatgtttgttg 36900431  T

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