View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_21 (Length: 258)
Name: NF8633_low_21
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_21 |
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| [»] scaffold0705 (1 HSPs) |
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Alignment Details
Target: scaffold0705 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0705
Description:
Target: scaffold0705; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 7093 - 7245
Alignment:
| Q |
89 |
tataaaacctatggctagccagacttggtcctgtactgtatcgtgatcgtatgaaccttttgggaattactcagtactcaagcttttcattcatcaaata |
188 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7093 |
tataaaacttatggctagccagaattggtcctgtactgtatcgtgatcgtatgaaccttttgggaattactcagtactcaagcttttcattcatcaaata |
7192 |
T |
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| Q |
189 |
atcacacaaaagatcacgttcccaatacaaaaagtcaatacatagatcgaattc |
242 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7193 |
atcacacaaaagatcacgttccc-atacaaaaagtcaatacatagatcgaattc |
7245 |
T |
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Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 15356040 - 15356192
Alignment:
| Q |
89 |
tataaaacctatggctagccagacttggtcctgtactgtatcgtgatcgtatgaaccttttgggaattactcagtactcaagcttttcattcatcaaata |
188 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15356040 |
tataaaacttatggctagccagaattggtcctgtactgtatcgtgatcgtatgaaccttttgggaattactcagtactcaagcttttcattcatcaaata |
15356139 |
T |
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| Q |
189 |
atcacacaaaagatcacgttcccaatacaaaaagtcaatacatagatcgaattc |
242 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15356140 |
atcacacaaaagatcacgttccc-atacaaaaagtcaatacatagatcgaattc |
15356192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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