View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_25 (Length: 234)
Name: NF8633_low_25
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 4664947 - 4664744
Alignment:
| Q |
14 |
gagacaatgatatagtgagaggaagtttggaaagtatagcttgggatactaggaaaaagtgtttgaagatcaacctatttgttaacatgtgcaaaattgc |
113 |
Q |
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| T |
4664947 |
gagacaatgatatagtgagaggaagtttggaaagtatagcttgggatactaggaaaaagtgtttgaagatcaacctatttgttaacaagtgcaaaattgc |
4664848 |
T |
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| Q |
114 |
agattgtttagtgatgtgtccgtgttctatatatggacacggcagagttatgcagagttattgtggaagaaggccggacataccatgccatcaatggaat |
213 |
Q |
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| T |
4664847 |
agattgtttagtgatgtgtccgtgttttttacatggacacgacagagttatgcagagttgttgtggaagaaggccggacataccatgccatcaatggaac |
4664748 |
T |
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| Q |
214 |
aggt |
217 |
Q |
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|||| |
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| T |
4664747 |
aggt |
4664744 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 42294620 - 42294572
Alignment:
| Q |
14 |
gagacaatgatatagtgagaggaagtttggaaagtatagcttgggatac |
62 |
Q |
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||||||||| || |||| |||||||||||||||||| ||||||||||| |
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| T |
42294620 |
gagacaatggtactgtgaaaggaagtttggaaagtattgcttgggatac |
42294572 |
T |
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