View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8633_low_26 (Length: 233)
Name: NF8633_low_26
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 33737082 - 33736870
Alignment:
| Q |
1 |
acttcctacatgatatgattttctgagattctatcacattcttcaagtataccaaattttaattcaattggttgttactgataggtcgaggtctagtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33737082 |
acttcctacatgatatgattttctgagattctatcacattcttcaagtataccaaattttaattcaattggttgttactgataggtcgaggtctagtaga |
33736983 |
T |
|
| Q |
101 |
agaccacaaagcagcaactaaaacattatttaatctggacataacactaaggggagagacaaattcatcaacaaagtgcataactagaactaacaagaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33736982 |
agaccacaaagcagcaactaaaacattatttaatctggacataacactaagggaagagacaaattcatcaacaaagtgcataactagaactaacaagaag |
33736883 |
T |
|
| Q |
201 |
gtcaatgacatatg |
214 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
33736882 |
gtc-atgacatatg |
33736870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 33621296 - 33621247
Alignment:
| Q |
4 |
tcctacatgatatgattttctgagattctatcacattcttcaagtatacca |
54 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
33621296 |
tcctacatgatatgattttttgaga-actatcacattcttcacgtatacca |
33621247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University