View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_28 (Length: 214)
Name: NF8633_low_28
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 24790134 - 24790327
Alignment:
| Q |
24 |
cgtgtctcttgtccatatgatctagtaaaatcagtgtgtgttcgt-------------aattgtctgataattaatgacatttgttttttcactttgtat |
110 |
Q |
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| T |
24790134 |
cgtgtctcttgtccatatgatctagtaaaatcagtgtgtgttcgttgaacgtgcctctaattgtctgataattaatgacatttgttttttcactttgtat |
24790233 |
T |
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| Q |
111 |
tcattacctcttatctcgtagatagagtgtgtttctttgtttcctcaaggtcatacttcttccaattttaatctatgttgtgttctctgcttct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24790234 |
tcattacctcttatctcgtagatagagtgtgtttctttgtttcctcgaggtcatacttcttccaattttaatctatgttgtgttctttgcttct |
24790327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 24818125 - 24817932
Alignment:
| Q |
24 |
cgtgtctcttgtccatatgatctagtaaaatcagtgtgtgttcgt-------------aattgtctgataattaatgacatttgttttttcactttgtat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24818125 |
cgtgtctcttgtccatatgatctagtaaaatcagtgtgtgttcgttgaacgtgcctctaattgtctgataattaatgacatttgttttttcactttgtat |
24818026 |
T |
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| Q |
111 |
tcattacctcttatctcgtagatagagtgtgtttctttgtttcctcaaggtcatacttcttccaattttaatctatgttgtgttctctgcttct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24818025 |
tcattacctcttatctcgtagatagagtgtgtttctttgtttcctcgaggtcatacttcttccaattttaatctatgttgtgttctttgcttct |
24817932 |
T |
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