View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_29 (Length: 207)
Name: NF8633_low_29
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 28636333 - 28636199
Alignment:
| Q |
13 |
tttggtgttgggcatctacgttttaggtaggcagcatgtgtagggtctagcgttgggtccactgtggggtacagtctgtggactaaattcatgcagtgta |
112 |
Q |
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| T |
28636333 |
tttggtgttgggcacctacgttttaggtaggtagcatgtgtaggatctaacgttggatccactgtggggtatagtctgtggaccaaattcatgcaatgta |
28636234 |
T |
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| Q |
113 |
ctcttccaactgagtgtgctcctgattcaatcaaa |
147 |
Q |
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| T |
28636233 |
ctcttccaactgagtgtgctcctgatttaatcaaa |
28636199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 28606548 - 28606414
Alignment:
| Q |
13 |
tttggtgttgggcatctacgttttaggtaggcagcatgtgtagggtctagcgttgggtccactgtggggtacagtctgtggactaaattcatgcagtgta |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
28606548 |
tttggtgttgggcacctacgttttaggtaggcagcatgtgtaggatctaacgttggatccactgtggggtatagtctgtggaccaaattcatgcaatgta |
28606449 |
T |
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| Q |
113 |
ctcttccaactgagtgtgctcctgattcaatcaaa |
147 |
Q |
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| T |
28606448 |
ctcttccaaccgagtgtgctcctaattgaatcaaa |
28606414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 28656828 - 28656695
Alignment:
| Q |
12 |
gtttggtgttgggcatctacgttttaggtaggcagcatgtgtagggtctagcgttgggtccactgtggggtacagtctgtggactaaattcatgcagtgt |
111 |
Q |
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| T |
28656828 |
gtttggttttggacatctacgttttaggtagacaacatatgtagggtctagcgttgggtccactatagggtatagtctgtggaccatatttatgcagtgt |
28656729 |
T |
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| Q |
112 |
actcttccaactgagtgtgctcctgattcaatca |
145 |
Q |
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| T |
28656728 |
actcttcccactgaatgtgctcctgattcaatca |
28656695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 28663903 - 28663769
Alignment:
| Q |
13 |
tttggtgttgggcatctacgttttaggtaggcagcatgtgtagggtctagcgttgggtccactgtggggtacagtctgtggactaaattcatgcagtgta |
112 |
Q |
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|||||||||||||||||| ||||||| |||||||||| ||| ||||||||| |||||||||| |||||||| ||||| ||||| | ||||||||| |||| |
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| T |
28663903 |
tttggtgttgggcatctaagttttagataggcagcatatgtggggtctagctttgggtccaccgtggggtatagtctatggaccatattcatgcaatgta |
28663804 |
T |
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| Q |
113 |
ctcttccaactgagtgtgctcctgattcaatcaaa |
147 |
Q |
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||||||| ||||||||| ||||||||| ||||||| |
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| T |
28663803 |
ctcttcccactgagtgtcctcctgattgaatcaaa |
28663769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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