View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_5 (Length: 511)
Name: NF8633_low_5
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Complemental strand, 52851333 - 52850863
Alignment:
| Q |
20 |
agtacgttagaacaaataatcaactaaccatgagaacttgttcatgaataaatgatgaagaannnnnnnncgaagaaatgaatagatgatgaagatgaat |
119 |
Q |
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| T |
52851333 |
agtacgttagaacaaataatcaactaaccatgagaacttgttcatgaataaatgatgaagaattttttttcgaagaaatgaatagatgatgaagatgaat |
52851234 |
T |
|
| Q |
120 |
ataggtaggaagcatttactttaatttaatcactatcatcttacannnnnnnncaatgatagaacgaaacctagaagataaaagtagaagtaaactgcaa |
219 |
Q |
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| T |
52851233 |
ataggtaggaagcatttactttaatttaatcactatcatcttacatttcttttcaatgatagaacgaaacctagaagataaaagtagaagtaaactgcaa |
52851134 |
T |
|
| Q |
220 |
cactaatttaaccgacctgagtttgaattgctgaaatgtcccctttttcccccctcaagctagctctattaaagggtagacattgtgtccttccaactaa |
319 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52851133 |
cactaatttaaccgacctgaatttaaattgctgaaatgtcccctttttccccc-tcaagctagctctattaaagggtagacattgtgtccttccaactaa |
52851035 |
T |
|
| Q |
320 |
gggattttatgctcttacgtcggcttaagaagccaaatccaaaagttttctttgaggtctcggccgtgttaataaaaccaaccaactttgcaacaagcgc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52851034 |
gggattttatgctcttacgtcggcttaagaagccaaatccaaaagttttctttgaggtctcacccgtgttaataaaaccaaccaactttgcaacaagcgc |
52850935 |
T |
|
| Q |
420 |
agcactttctcttatgtggttcaaatctcttgtatccgtccatatgagccatgccaattgtatacttctgtg |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52850934 |
agcactttctcttatgtggttcaaatctcttgtatccgtccatatgagccatgccaattgtatacttctgtg |
52850863 |
T |
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