View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8633_low_6 (Length: 441)
Name: NF8633_low_6
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 4142080 - 4141666
Alignment:
| Q |
18 |
atatatgtttttgaggatgatcaagtgttgctgaagtatgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctactaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4142080 |
atatatgtttttgaggatgatcaagtgttgctgaagtatgattttgacttgaatttgattctttacaatcccaggaggggtactttcaaggctactaatt |
4141981 |
T |
|
| Q |
118 |
ttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcataggattatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141980 |
ttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcataggattatt |
4141881 |
T |
|
| Q |
218 |
tcccatgaaaggttacatgttacttcttggattattaattaattgtcgaatggttttgcatcttcagaaattgctgtcattttcatttatattatttctt |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141880 |
tcccatgaaaggttacatgttatttcttggattattaattaattgtcgaatggttttgcatcttcagaaattgctgtcattttcatttatattatttctt |
4141781 |
T |
|
| Q |
318 |
tgttacaggtttttgttctctcgtcatacattacatttgatatatttcacaattatgcattgcattatatggttctttgtttggttttctatgattctaa |
417 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141780 |
tgttacaggtttttgttctctcgtcatacgttacatttgatatatttcacaattatgcattgcattatatggttctttgtttggttttctatgattctaa |
4141681 |
T |
|
| Q |
418 |
ttatgattttgatgt |
432 |
Q |
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| T |
4141680 |
ttatgattttgatgt |
4141666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 4157890 - 4157675
Alignment:
| Q |
18 |
atatatgtttttgaggatgatcaagtgttgctgaagt---atgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctacta |
114 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| | |||||||| ||||||| || ||||| |||||||||| |
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| T |
4157890 |
atatatgtttttgaggatgatcaagtgttgctggagttgtatgattctgacttgaatttggtcctttacaaccccaggagcggcactttgaaggctacta |
4157791 |
T |
|
| Q |
115 |
attttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcataggatt |
214 |
Q |
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||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||||| |
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| T |
4157790 |
attttaaactaattcctgaagtatgtattgaaagtttaatatcacctagttctcta---taggatgtagatgtagtgc--tgtcacttgagcataggatt |
4157696 |
T |
|
| Q |
215 |
atttcccatgaaaggttacatg |
236 |
Q |
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|||||||| ||||||||||||| |
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| T |
4157695 |
atttccca-gaaaggttacatg |
4157675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 3754713 - 3754895
Alignment:
| Q |
26 |
ttttgaggatgatcaagtgttgctgaagt------atgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctactaatttt |
119 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||| ||||| || ||||||| ||| ||| |
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| T |
3754713 |
ttttgaggatgatcaagtgttgctgaagtttatgaatgatattgacttgaatttggttctttacaaccccaggagcggtaccttgaaggctattaacttt |
3754812 |
T |
|
| Q |
120 |
aaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcactt |
202 |
Q |
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||| | ||| |||||||||| |||||||||||||||||| ||||||||||||| || ||||||| |||||||||||||| |
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| T |
3754813 |
aaatatactccagaagtctgtggtgaaagtttaatatcaccatcttctctatgctaggatgtagatgtggtgctatgtcactt |
3754895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 376
Target Start/End: Original strand, 3754937 - 3755085
Alignment:
| Q |
230 |
ttacatgttacttcttggattattaattaattgtcgaatggtt----ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-ca |
324 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| | |||||| | ||||| ||||||||| | |||||||||||||||||||||||| ||||||| |
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| T |
3754937 |
ttacatgttatttcatggattattaattaatggacgaatgaatgatattgcagcttcagaaacttctgtcattttcatttatattatttgtttgttattt |
3755036 |
T |
|
| Q |
325 |
ggtttttgttctctcgtcatacattacatttgatatatttcacaattatgca |
376 |
Q |
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||||||| ||||| ||||||||||||||||||||| ||||||||| |||| |
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| T |
3755037 |
ggttttttttctc---tcatacattacatttgatatagttcacaattttgca |
3755085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 1889409 - 1889345
Alignment:
| Q |
141 |
gttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgag |
205 |
Q |
| |
|
||||| ||||| ||||||||| ||||| |||||||||| ||||||| ||||||||||||||||| |
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| T |
1889409 |
gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag |
1889345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 1890875 - 1890811
Alignment:
| Q |
141 |
gttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgag |
205 |
Q |
| |
|
||||| ||||| ||||| ||| ||||| |||||||||| ||||||| || |||||||||||||| |
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| T |
1890875 |
gttgagagtttgatatcgccttgttcttaatgctagaatgtagatgtggtactatgtcacttgag |
1890811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 3746197 - 3746261
Alignment:
| Q |
96 |
ggtactttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacc |
160 |
Q |
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|||||||| ||| ||||| |||||| | | |||| |||||||||||||| |||||||||||||| |
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| T |
3746197 |
ggtactttgaagtctactgattttagaaaagttccagaagtctgtgttgagagtttaatatcacc |
3746261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 11081927 - 11082114
Alignment:
| Q |
27 |
tttgaggatgatcaagtgttgctgaagt------atgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctactaatttta |
120 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| |||||||| |
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| T |
11081927 |
tttgaggatgatcaagtgttgttgaagtttatgaatgattttgacttgaatttgattctttacaatcctaggagccgtactttgaaggctaataatttta |
11082026 |
T |
|
| Q |
121 |
aacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcat |
208 |
Q |
| |
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|| ||||| ||||||||||||||||||||| |||||||| ||||||||| || || ||||||| ||||| |||||||||||||| |
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| T |
11082027 |
aagatattccagaagtctgtgttgaaagtttagtatcaccttgttctctatattaagatgtagatgtggtgctttgtcacttgagcat |
11082114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 11082196 - 11082345
Alignment:
| Q |
267 |
atggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttca |
366 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
11082196 |
atggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttca |
11082295 |
T |
|
| Q |
367 |
caattatgcattgcattatatggttctttgtttggttttctatgattctaa |
417 |
Q |
| |
|
|||||||||||| | ||||||| | ||| |||| ||||||||||||||| |
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|
| T |
11082296 |
caattatgcattacgttatatgatacttcgttt-aatttctatgattctaa |
11082345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
| Q |
271 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat |
344 |
Q |
| |
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||||||| ||| ||||||||| | ||||||||||||||||| | ||||||| | |||||||||||||| |||| |
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|
| T |
1427351 |
ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat |
1427278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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