View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8633_low_7 (Length: 430)
Name: NF8633_low_7
Description: NF8633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8633_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 419
Target Start/End: Complemental strand, 17898867 - 17898461
Alignment:
| Q |
20 |
tctatggcttaaaggatttaatcgaaaaaattgaaacttgtgatgaatttcatgcaaagatgcagggtccatatctgagacttgatatggcttgaaaaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17898867 |
tctatggcttaaaggatttaatcgaaaaaattgaaacttgtgatgcatttcatgcaaagatgcagggtccatatctgagacttgatatggcttgaaaaga |
17898768 |
T |
|
| Q |
120 |
aggtctatctcacctaattattgaaaaagactcgaaagtgcgtattgacatggttaccaaacattgcaagatcaacggaaccaccccttcattgattcga |
219 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
17898767 |
aggtctatctcatctaattgttgaaaatgactcgaaagtgtttattgacatggttaccaaacattgcaagatcaatggaacca-cccttcattgattcga |
17898669 |
T |
|
| Q |
220 |
catattccacagctttttcagcaaagctagcatacatgttattcacagttgacgagaaggcaata--------aattggttagcaaattttagtttctct |
311 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17898668 |
catattccacagctttttcagcgaaactggcatacatgttattcacacttgacgcaaaggcaatagatgtgctgattggttagcaaattttagtttctct |
17898569 |
T |
|
| Q |
312 |
ttgaattctgacacctcctaaagagcttcaaaagctcatttttatgatattgttggccgtgcattcctaaaattatacatttagcctcttaatttcttgt |
411 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17898568 |
ttgaattttgacacctcctaaagagcttcaaaagctcatttttatgatattgttggccgtgcattcctaaaaatgtacatttagcctcttaatttcttgt |
17898469 |
T |
|
| Q |
412 |
tttttctt |
419 |
Q |
| |
|
|||||||| |
|
|
| T |
17898468 |
tttttctt |
17898461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 42161278 - 42161152
Alignment:
| Q |
100 |
cttgatatggcttgaaaagaaggtctatctcacctaattattgaaaaagactcgaaagtgcgtattgacatggttaccaaacattgcaagatcaacggaa |
199 |
Q |
| |
|
|||||||||||||| | || ||| |||||||| | ||| |||| | ||||| ||||||| |||||| |||||||| || ||||||||||||| |||| |
|
|
| T |
42161278 |
cttgatatggcttggagtgagggtttatctcacgtgattgttgagagtgactcaaaagtgcttattgatatggttactaacaattgcaagatcaatggaa |
42161179 |
T |
|
| Q |
200 |
ccaccccttcattgattcgacatattc |
226 |
Q |
| |
|
||| |||||| || |||||| ||||| |
|
|
| T |
42161178 |
ccatcccttctctggttcgacgtattc |
42161152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 43691594 - 43691721
Alignment:
| Q |
91 |
tatctgagacttgatatggcttgaaaagaaggtctatctcacctaattattgaaaaagactcgaaagtgcgtattgacatggttaccaaacattgcaaga |
190 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||||||| ||| || ||||| |||||| ||||||||| |
|
|
| T |
43691594 |
tatctgggacttcatatggcttgaagagaaggtctatctcacctaattgttgaaagtgactcgaaagtgtttatagatatggtcaccaaaaattgcaaga |
43691693 |
T |
|
| Q |
191 |
tcaacggaaccaccccttcattgattcg |
218 |
Q |
| |
|
|||| ||||| |||||||| |||||||| |
|
|
| T |
43691694 |
tcaaaggaactaccccttccttgattcg |
43691721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 20670300 - 20670192
Alignment:
| Q |
101 |
ttgatatggcttgaaaagaaggtctatctcacctaattattgaaaaagactcgaaagtgcgtattgacatggttaccaaacattgcaagatcaacggaac |
200 |
Q |
| |
|
||||||||||||| | || ||| |||||||| | ||| |||| | ||||| ||||| | |||||| |||||||| || ||||||||||||| ||||| |
|
|
| T |
20670300 |
ttgatatggcttggagtgagggtttatctcacgtgattgttgagagtgactcaaaagttcttattgatatggttactaacaattgcaagatcaatggaac |
20670201 |
T |
|
| Q |
201 |
caccccttc |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
20670200 |
catcccttc |
20670192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University