View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8634_low_1 (Length: 362)

Name: NF8634_low_1
Description: NF8634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8634_low_1
NF8634_low_1
[»] chr3 (17 HSPs)
chr3 (1-343)||(6238174-6238519)
chr3 (62-335)||(6259727-6260006)
chr3 (64-343)||(6169466-6169751)
chr3 (64-335)||(6245862-6246142)
chr3 (224-326)||(6266414-6266516)
chr3 (199-342)||(6143020-6143160)
chr3 (193-343)||(6590537-6590687)
chr3 (198-264)||(5250874-5250940)
chr3 (202-343)||(13269779-13269917)
chr3 (204-259)||(6900818-6900873)
chr3 (28-61)||(6238140-6238173)
chr3 (64-119)||(6590755-6590810)
chr3 (64-119)||(6917679-6917734)
chr3 (198-264)||(4388195-4388261)
chr3 (202-264)||(5268765-5268827)
chr3 (235-309)||(6883274-6883348)
chr3 (240-310)||(8568163-8568233)
[»] chr1 (1 HSPs)
chr1 (67-141)||(35139802-35139876)
[»] scaffold0425 (1 HSPs)
scaffold0425 (193-261)||(13154-13222)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 6238174 - 6238519
Alignment:
Q  1 agctgtacgtcggtgcttaacttaaaaccgcaaatattttaataattttaagaacaaattataactgtctgaaagtaaaaattcgactatttcctccttt 100  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6238174 agctgtccgtcggtgcttaacttaaatccgcaaatattttaataattttaagaacaaattataactgtctgaaagtaaaaattcgactatttcctctttt 6238273  T
Q  101 tcacgctctctaccatatacgatagattcagccatgaatga---agtagcaaaatcgctggctccatcttcataataataagaactatgaagttgcaatc 197  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6238274 tcacgctctctaccatatacgatagattcagccatgaatgatgaagtagcaaaatcgctggctccatcttcataataataagaactatgaagttgcaatc 6238373  T
Q  198 tatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcc 297  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6238374 tatccttttgatttgcaagaaactctaacctcttgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagatagcgttgtatctttcc 6238473  T
Q  298 cttttgttgtgcagcatcagtagcaatgacatccaatacttgctct 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6238474 cttttgttgtgcagcatcagtagcaatgacatccaatacttgctct 6238519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 62 - 335
Target Start/End: Original strand, 6259727 - 6260006
Alignment:
Q  62 taactgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatatacgatagattcagccatgaatgaagtagcaaaatcgctggctc 161  Q
    |||||||||||||||||||||| || ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||    
T  6259727 taactgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatgatagattcagccatgaatgaagtagcgaaaccgctggctc 6259826  T
Q  162 catcttcata---ataataag--aactat-gaagttgcaatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattc 255  Q
      ||||||||   ||||| ||  |||| | |||||| |||||||   ||||   |||||||||||||||||||||  |||||||||||||||||||||||    
T  6259827 tttcttcatataaataattagtaaactcttgaagttccaatctagatttttccattgcaagaaactctagcctcttaagcaatactttaatcctagattc 6259926  T
Q  256 aaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcagcatcagtagcaatgacatccaata 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  6259927 aaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcggcgtcagtagcaatgacatccaata 6260006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 64 - 343
Target Start/End: Original strand, 6169466 - 6169751
Alignment:
Q  64 actgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatatacgatagattcagccatgaatgaagtag---caaaatcgctggct 160  Q
    ||||| |||||||||||| || | |||||| || || ||| ||||||||||||||| ||||||||||  ||||||||| | ||   |||||| |||||||    
T  6169466 actgtatgaaagtaaaaaatcaattatttcttctttctcatgctctctaccatatatgatagattcattcatgaatgatgaagttccaaaattgctggct 6169565  T
Q  161 ccatcttcataataataagaa--ct-atgaagttgcaatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaa 257  Q
    |||||||||| |||| || ||  || |||||||||||||||||| ||||| |||||||||| || |||||||| || |||||||||||||||||||||||    
T  6169566 ccatcttcatgataacaataatcctgatgaagttgcaatctatcattttgttttgcaagaacctttagcctcttgatcaatactttaatcctagattcaa 6169665  T
Q  258 atcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcagcatcagtagcaatgacatccaatacttgctct 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||    
T  6169666 atcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcggcgtcagtagcaatgacatccaacagttgctct 6169751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 64 - 335
Target Start/End: Original strand, 6245862 - 6246142
Alignment:
Q  64 actgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatatacgatagattcagccatgaatgaagtagc--aaaatc-gctggct 160  Q
    ||||||||||||||||||||| | |||||| || || ||| |||||||||||||||  | |||||||||||  || || | ||   |||||| |||||||    
T  6245862 actgtctgaaagtaaaaattcaattatttcttctttctcatgctctctaccatatatcacagattcagccaccaaagatgcagttgaaaatctgctggct 6245961  T
Q  161 ccatcttcataataataagaacta------tgaagttgcaatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagatt 254  Q
    ||||||||||||||||||  |||       ||||||  |||| ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  6245962 ccatcttcataataataacgacttaattcgtgaagtcccaatatattcttttgatctgcaagaaactctagcctcttgagcaatactttaatcctagatt 6246061  T
Q  255 caaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcagcatcagtagcaatgacatccaata 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||  |||||||    
T  6246062 caaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttttgcagcgtcactagcaatgatgtccaata 6246142  T

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Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 6266414 - 6266516
Alignment:
Q  224 agcctctcgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcagcatcagtagcaa 323  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||||    
T  6266414 agcctcttgagcaatactttaatcctagattcaaaccgattgatagaacctgaaagaaagcgttgtatctttcccttttgatttgcagagtcactagcaa 6266513  T
Q  324 tga 326  Q
    |||    
T  6266514 tga 6266516  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 342
Target Start/End: Original strand, 6143020 - 6143160
Alignment:
Q  199 atccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttccc 298  Q
    ||||||||||  |||| | |||||||||||||  |||| ||||||||| ||||||||||||||||| ||| || | ||||||||||||  |||||| |||    
T  6143020 atccttttgacctgcacggaactctagcctcttcagcattactttaattctagattcaaatcgattaataaaagcagaaagaaagcgtcttatcttcccc 6143119  T
Q  299 ttttgttgtgcagcatcagtagcaatgacatccaatacttgctc 342  Q
    ||| | |||   || ||||||||||| |||||||||| ||||||    
T  6143120 tttcggtgt---gcgtcagtagcaataacatccaatagttgctc 6143160  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 343
Target Start/End: Complemental strand, 6590687 - 6590537
Alignment:
Q  193 caatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaa---tcgattgatagaacctgaaagaaagcgttgt 289  Q
    |||| |||||||||||| |||||||||||||||  |||  | |||| |||||||||||| ||||||   |||||| ||| ||| ||||||||||||| ||    
T  6590687 caatttatccttttgatctgcaagaaactctaggttctgtatcaatgctttaatcctagcttcaaatcctcgattaataaaacgtgaaagaaagcgtcgt 6590588  T
Q  290 atctttcccttttgttgtgcagcatcagtagcaatgacatccaatacttgctct 343  Q
    ||||| |||||| |||||||  ||||   |||||| |||||||||| |||||||    
T  6590587 atcttgccctttggttgtgcgtcatc---agcaatcacatccaatagttgctct 6590537  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 5250874 - 5250940
Alignment:
Q  198 tatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgatt 264  Q
    |||||||||| ||||||||||| |||||| |||| |||||| |||||||||||||||||||| ||||    
T  5250874 tatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggatt 5250940  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 343
Target Start/End: Complemental strand, 13269917 - 13269779
Alignment:
Q  202 cttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttt 301  Q
    |||| ||| |||||||||| |||||||||| ||| |  ||||||| ||||||||||||||||| ||| || | |||||||| ||   |||||| ||||||    
T  13269917 ctttagatctgcaagaaacactagcctctccagcgaagctttaattctagattcaaatcgattaataaaagcagaaagaaaacgacttatcttccccttt 13269818  T
Q  302 tgttgtgcagcatcagtagcaatgacatccaatacttgctct 343  Q
     |||||   || |||||| |||| |||||||||| |||||||    
T  13269817 cgttgt---gcgtcagtaacaatcacatccaatagttgctct 13269779  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 6900818 - 6900873
Alignment:
Q  204 tttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaat 259  Q
    |||||| ||||| ||||| ||||||||  |||||||||||||||||||||||||||    
T  6900818 tttgatctgcaataaactttagcctcttcagcaatactttaatcctagattcaaat 6900873  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 6238140 - 6238173
Alignment:
Q  28 ccgcaaatattttaataattttaagaacaaatta 61  Q
    ||||||||||||||||||||||||||||||||||    
T  6238140 ccgcaaatattttaataattttaagaacaaatta 6238173  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 6590810 - 6590755
Alignment:
Q  64 actgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatata 119  Q
    ||||||||||||||||||||  | ||||||||| || ||| |||||||||||||||    
T  6590810 actgtctgaaagtaaaaatttaattatttcctctttctcatgctctctaccatata 6590755  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 6917679 - 6917734
Alignment:
Q  64 actgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatata 119  Q
    ||||||||| ||||||||||| | ||||||||| || ||| |||||||||||||||    
T  6917679 actgtctgatagtaaaaattcaattatttcctctttctcatgctctctaccatata 6917734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 4388261 - 4388195
Alignment:
Q  198 tatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgatt 264  Q
    |||||||||| || |||||||| |||| | |||| |||||| |||| ||||||||||||||| ||||    
T  4388261 tatccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggatt 4388195  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 5268765 - 5268827
Alignment:
Q  202 cttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgatt 264  Q
    |||||| ||||||||||| |||||| |||| |||||| |||| |||||||| |||||| ||||    
T  5268765 cttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggatt 5268827  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 6883274 - 6883348
Alignment:
Q  235 caatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgc 309  Q
    ||||||||  |||||| ||| | || |||| ||| |||||||||||| |||||||||||| ||| ||||||||||    
T  6883274 caatacttccatcctatattgacattgattaataaaacctgaaagaatgcgttgtatcttgcccatttgttgtgc 6883348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 8568233 - 8568163
Alignment:
Q  240 ctttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgca 310  Q
    |||| ||||||||||||||||||||  || |||||||||| ||| ||||  |||||||||||  |||||||    
T  8568233 ctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtgttgcgtctttccctttctttgtgca 8568163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 35139876 - 35139802
Alignment:
Q  67 gtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatatacgatagattcagccatgaatga 141  Q
    |||||||| |||||||| || ||||||||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  35139876 gtctgaaaataaaaatttgattatttcctctttttcacgttctctaccatatatgatagattcagccatgaatga 35139802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 13222 - 13154
Alignment:
Q  193 caatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcg 261  Q
    |||| |||||||||||| |||||| ||||||| ||||   |||||||||||| |||||||||| |||||    
T  13222 caatatatccttttgatctgcaaggaactctaacctcctcagcaatactttactcctagattccaatcg 13154  T

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