View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8634_low_2 (Length: 360)

Name: NF8634_low_2
Description: NF8634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8634_low_2
NF8634_low_2
[»] chr3 (2 HSPs)
chr3 (20-354)||(53924366-53924701)
chr3 (299-335)||(899881-899917)
[»] chr1 (12 HSPs)
chr1 (294-330)||(35190374-35190410)
chr1 (299-334)||(45525474-45525509)
chr1 (299-334)||(45531575-45531610)
chr1 (294-335)||(35476304-35476345)
chr1 (294-330)||(35147366-35147402)
chr1 (294-330)||(35199934-35199970)
chr1 (299-335)||(35204903-35204939)
chr1 (294-332)||(35219063-35219101)
chr1 (294-332)||(35224915-35224953)
chr1 (297-327)||(35270441-35270471)
chr1 (299-328)||(35295988-35296017)
chr1 (294-330)||(35215986-35216022)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 53924701 - 53924366
Alignment:
Q  20 ggtttcaggaattttcagctttaccacagaactatcagacttcatctcctttaaaa-gaatgaagatggccgtgtcattaacattcaggtgttccaactg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  53924701 ggtttcaggaattttcagctttaccacagaactatcagacttcatctcctttaaaaagaatgaagatggctgtgtcattaacattcaagtgttccaactg 53924602  T
Q  119 ttttcttgatgtattgttctaatgagagcgggtgtttataaacgaccccgactttgattctcaaaatcaagtagaaatttgagtaacaaaatacataaca 218  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  53924601 ttttcttgatgtaatgttctaatgagagcgggtgtttataaacgaccccgactttgattctcaaaatcaagtagaaatttgagcaacaaaatacataaca 53924502  T
Q  219 gagaacaatattcatctcatctaagatgtaaaaccacttgcatagttcaactaatattgcttgattgtcttacactcttacttaggcctaacttctattc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53924501 gagaacaatattcatctcatctaagatgtaaaaccacttgcatagttcaactaatattgcttgattgtcttacactcttacttaggcctaacttctattc 53924402  T
Q  319 cttcaagaaagaaatttaaacaatcagaataatcta 354  Q
    ||||||||||||||||||||||||||||||||||||    
T  53924401 cttcaagaaagaaatttaaacaatcagaataatcta 53924366  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 899917 - 899881
Alignment:
Q  299 cttaggcctaacttctattccttcaagaaagaaattt 335  Q
    |||||||||||||||||||||||||||||||||||||    
T  899917 cttaggcctaacttctattccttcaagaaagaaattt 899881  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 35190374 - 35190410
Alignment:
Q  294 tcttacttaggcctaacttctattccttcaagaaaga 330  Q
    |||||||||||||||||||||||||||||||||||||    
T  35190374 tcttacttaggcctaacttctattccttcaagaaaga 35190410  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 45525474 - 45525509
Alignment:
Q  299 cttaggcctaacttctattccttcaagaaagaaatt 334  Q
    ||||||||||||||||||||||||||||||||||||    
T  45525474 cttaggcctaacttctattccttcaagaaagaaatt 45525509  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 45531575 - 45531610
Alignment:
Q  299 cttaggcctaacttctattccttcaagaaagaaatt 334  Q
    ||||||||||||||||||||||||||||||||||||    
T  45531575 cttaggcctaacttctattccttcaagaaagaaatt 45531610  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 35476304 - 35476345
Alignment:
Q  294 tcttacttaggcctaacttctattccttcaagaaagaaattt 335  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  35476304 tcttccttaggtctaacttctattccttcaagaaagaaattt 35476345  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 35147366 - 35147402
Alignment:
Q  294 tcttacttaggcctaacttctattccttcaagaaaga 330  Q
    ||||||||||||||||||||||||||||||| |||||    
T  35147366 tcttacttaggcctaacttctattccttcaacaaaga 35147402  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 35199934 - 35199970
Alignment:
Q  294 tcttacttaggcctaacttctattccttcaagaaaga 330  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35199934 tcttacttaggcctgacttctattccttcaagaaaga 35199970  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 35204903 - 35204939
Alignment:
Q  299 cttaggcctaacttctattccttcaagaaagaaattt 335  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35204903 cttaggcctaagttctattccttcaagaaagaaattt 35204939  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 35219063 - 35219101
Alignment:
Q  294 tcttacttaggcctaacttctattccttcaagaaagaaa 332  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  35219063 tcttccttaggcctaacttctattccttcaacaaagaaa 35219101  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 35224915 - 35224953
Alignment:
Q  294 tcttacttaggcctaacttctattccttcaagaaagaaa 332  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  35224915 tcttccttaggcctaacttctattccttcaacaaagaaa 35224953  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 35270441 - 35270471
Alignment:
Q  297 tacttaggcctaacttctattccttcaagaa 327  Q
    |||||||||||||||||||||||||||||||    
T  35270441 tacttaggcctaacttctattccttcaagaa 35270471  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 328
Target Start/End: Complemental strand, 35296017 - 35295988
Alignment:
Q  299 cttaggcctaacttctattccttcaagaaa 328  Q
    ||||||||||||||||||||||||||||||    
T  35296017 cttaggcctaacttctattccttcaagaaa 35295988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 35215986 - 35216022
Alignment:
Q  294 tcttacttaggcctaacttctattccttcaagaaaga 330  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  35215986 tcttacttaggcctaacttctattcctgcaagcaaga 35216022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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