View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8634_low_4 (Length: 227)

Name: NF8634_low_4
Description: NF8634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8634_low_4
NF8634_low_4
[»] chr3 (15 HSPs)
chr3 (1-227)||(11772615-11772841)
chr3 (1-61)||(11778570-11778630)
chr3 (186-227)||(11778628-11778669)
chr3 (32-111)||(9853337-9853417)
chr3 (24-111)||(9842392-9842480)
chr3 (85-149)||(10264627-10264691)
chr3 (80-126)||(10130843-10130889)
chr3 (80-126)||(10372126-10372172)
chr3 (66-123)||(10093190-10093247)
chr3 (66-123)||(10200072-10200129)
chr3 (65-103)||(10130689-10130727)
chr3 (65-103)||(10372288-10372326)
chr3 (90-123)||(10134711-10134744)
chr3 (181-217)||(10360125-10360161)
chr3 (170-210)||(10532617-10532657)
[»] chr4 (1 HSPs)
chr4 (66-120)||(17848916-17848970)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11772841 - 11772615
Alignment:
Q  1 tccgtttatctatgctttatatcgcacatgctaacaaagcagtgaaacagaaaatttgaaacagtatcatatgaacattcacttaaagctacaaattaag 100  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772841 tccgtttatctatgctttatattacacatgctaacaaagcagtgaaacagaaaatttgaaacagtatcatatgaacattcacttaaagctacaaattaag 11772742  T
Q  101 aatattacaaatcctactgcattctaccttgtctaacgggatcatgcagcaggttattaggaaggaaacatacaaagatgcattcaaatgataataaaat 200  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772741 aatattacaaatcctaatgcattctactttgtctaacgggatcatgcagcaggttattaggaaggaaacatacaaagatgcattcaaatgataataaaat 11772642  T
Q  201 gcaaactgaatattagccaagtaaata 227  Q
    |||||||||||||||||||||||||||    
T  11772641 gcaaactgaatattagccaagtaaata 11772615  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11778570 - 11778630
Alignment:
Q  1 tccgtttatctatgctttatatcgcacatgctaacaaagcagtgaaacagaaaatttgaaa 61  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  11778570 tccgtttatctatgctttatattacacatgctaacaaagcagtgaaacagaaaatttgaaa 11778630  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 11778628 - 11778669
Alignment:
Q  186 aaatgataataaaatgcaaactgaatattagccaagtaaata 227  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11778628 aaatgataataaaatgcaaactgaatattagccaagtaaata 11778669  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 9853417 - 9853337
Alignment:
Q  32 taacaaagcagtgaaacagaaaatttgaaacagtatcatatgaacattca-cttaaagctacaaattaagaatattacaaa 111  Q
    |||||||||| || ||||||| |||| |||||||||||||| | ||||||  ||||||| |||||||||||||||||||||    
T  9853417 taacaaagcaatggaacagaagatttcaaacagtatcatattagcattcagtttaaagcaacaaattaagaatattacaaa 9853337  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 9842480 - 9842392
Alignment:
Q  24 gcacatgctaacaaagcagtgaaacagaaaatttgaaacagtatcatatgaacattcactt-aaagctacaaattaagaatattacaaa 111  Q
    ||||||| ||||||||||  | ||||||| |||| |||||||||||||| | |||| | || ||||| |||||||||||||||||||||    
T  9842480 gcacatgataacaaagcaacggaacagaagatttcaaacagtatcatattagcatttagtttaaagcaacaaattaagaatattacaaa 9842392  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 10264691 - 10264627
Alignment:
Q  85 aaagctacaaattaagaatattacaaatcctactgcattctaccttgtctaacgggatcatgcag 149  Q
    |||| ||||||||||||||||||||||||||||| |||| ||| |||||| |  |||||||||||    
T  10264691 aaagttacaaattaagaatattacaaatcctactacattgtactttgtctgatcggatcatgcag 10264627  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 10130889 - 10130843
Alignment:
Q  80 cacttaaagctacaaattaagaatattacaaatcctactgcattcta 126  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  10130889 cactaaaagctacaaattaagaatattacaaaccctaccgcattcta 10130843  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 10372126 - 10372172
Alignment:
Q  80 cacttaaagctacaaattaagaatattacaaatcctactgcattcta 126  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  10372126 cactaaaagctacaaattaagaatattacaaaccctaccgcattcta 10372172  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 10093247 - 10093190
Alignment:
Q  66 atcatatgaacattcacttaaagctacaaattaagaatattacaaatcctactgcatt 123  Q
    ||||||||| ||||  ||||||||||||||  |||||||||||||| |||||||||||    
T  10093247 atcatatgagcatttgcttaaagctacaaagcaagaatattacaaaccctactgcatt 10093190  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 10200129 - 10200072
Alignment:
Q  66 atcatatgaacattcacttaaagctacaaattaagaatattacaaatcctactgcatt 123  Q
    ||||||||| ||||  ||||||||||||||  |||||||||||||| |||||||||||    
T  10200129 atcatatgagcatttgcttaaagctacaaagcaagaatattacaaaccctactgcatt 10200072  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 10130727 - 10130689
Alignment:
Q  65 tatcatatgaacattcacttaaagctacaaattaagaat 103  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  10130727 tatcatatgagcattcacttaaagttacaaattaagaat 10130689  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 10372288 - 10372326
Alignment:
Q  65 tatcatatgaacattcacttaaagctacaaattaagaat 103  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  10372288 tatcatatgagcattcacttaaagttacaaattaagaat 10372326  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 10134744 - 10134711
Alignment:
Q  90 tacaaattaagaatattacaaatcctactgcatt 123  Q
    |||||||||||||||||||||| |||||||||||    
T  10134744 tacaaattaagaatattacaaaccctactgcatt 10134711  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 10360125 - 10360161
Alignment:
Q  181 cattcaaatgataataaaatgcaaactgaatattagc 217  Q
    |||||||||||||||||||| |||||||| |||||||    
T  10360125 cattcaaatgataataaaatacaaactgactattagc 10360161  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 10532657 - 10532617
Alignment:
Q  170 atacaaagatgcattcaaatgataataaaatgcaaactgaa 210  Q
    |||||||||||||| |||||||||| ||||| |||||||||    
T  10532657 atacaaagatgcatacaaatgataagaaaatacaaactgaa 10532617  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 17848916 - 17848970
Alignment:
Q  66 atcatatgaacattcacttaaagctacaaattaagaatattacaaatcctactgc 120  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||| | ||||||    
T  17848916 atcatatgaacattcatttacagctacaaattcagaatattacaaagcttactgc 17848970  T

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