View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8635_1 (Length: 776)

Name: NF8635_1
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8635_1
NF8635_1
[»] chr7 (39 HSPs)
chr7 (86-631)||(44529486-44530028)
chr7 (33-156)||(43459304-43459427)
chr7 (652-748)||(44529343-44529439)
chr7 (426-561)||(30924737-30924872)
chr7 (423-584)||(48647160-48647321)
chr7 (437-561)||(7259424-7259548)
chr7 (454-577)||(35727950-35728072)
chr7 (423-586)||(35728812-35728974)
chr7 (454-576)||(42477633-42477754)
chr7 (423-577)||(44334176-44334329)
chr7 (460-576)||(45584251-45584367)
chr7 (418-561)||(12223400-12223542)
chr7 (29-87)||(29785776-29785834)
chr7 (455-577)||(39708373-39708495)
chr7 (454-577)||(48646300-48646423)
chr7 (454-576)||(7258528-7258648)
chr7 (425-563)||(33607236-33607374)
chr7 (461-559)||(45583856-45583954)
chr7 (406-559)||(32794495-32794648)
chr7 (440-575)||(10894596-10894732)
chr7 (478-575)||(43457721-43457820)
chr7 (363-553)||(44530294-44530492)
chr7 (428-499)||(48787613-48787684)
chr7 (447-577)||(7509193-7509323)
chr7 (580-637)||(271903-271960)
chr7 (460-557)||(48788430-48788526)
chr7 (461-573)||(10898829-10898940)
chr7 (29-67)||(44530028-44530066)
chr7 (523-576)||(6680338-6680391)
chr7 (524-577)||(34707864-34707917)
chr7 (447-574)||(32793423-32793550)
chr7 (507-577)||(8047079-8047149)
chr7 (471-561)||(34710156-34710246)
chr7 (652-747)||(647815-647911)
chr7 (513-576)||(33061081-33061145)
chr7 (497-557)||(43461513-43461572)
chr7 (523-562)||(12221568-12221607)
chr7 (433-499)||(24287797-24287863)
chr7 (580-637)||(647981-648038)
[»] chr2 (31 HSPs)
chr2 (61-156)||(7076003-7076098)
chr2 (423-561)||(31090425-31090563)
chr2 (433-561)||(32765205-32765333)
chr2 (423-561)||(24458328-24458466)
chr2 (425-561)||(2910368-2910504)
chr2 (405-554)||(39256713-39256862)
chr2 (454-576)||(32766029-32766150)
chr2 (461-576)||(2911244-2911357)
chr2 (454-577)||(39015257-39015379)
chr2 (454-576)||(31091276-31091397)
chr2 (497-573)||(7073907-7073983)
chr2 (141-184)||(17329830-17329873)
chr2 (161-233)||(17329831-17329903)
chr2 (497-586)||(17330010-17330099)
chr2 (507-564)||(33163254-33163311)
chr2 (461-576)||(24459210-24459324)
chr2 (523-574)||(33162020-33162071)
chr2 (423-561)||(39016111-39016246)
chr2 (524-576)||(7412564-7412616)
chr2 (525-577)||(12004776-12004828)
chr2 (513-561)||(14704265-14704313)
chr2 (426-500)||(12004546-12004620)
chr2 (686-747)||(18340622-18340683)
chr2 (405-561)||(38984691-38984848)
chr2 (513-576)||(40000142-40000205)
chr2 (448-490)||(15440864-15440906)
chr2 (446-488)||(31442902-31442944)
chr2 (580-637)||(18340787-18340844)
chr2 (449-490)||(18675463-18675504)
chr2 (425-490)||(34582348-34582413)
chr2 (446-499)||(38855941-38855994)
[»] chr5 (29 HSPs)
chr5 (423-577)||(4593106-4593260)
chr5 (425-577)||(40612378-40612530)
chr5 (423-561)||(2464937-2465075)
chr5 (423-564)||(32641460-32641601)
chr5 (428-561)||(8074718-8074851)
chr5 (454-577)||(4593858-4593980)
chr5 (423-561)||(545761-545899)
chr5 (423-540)||(28589991-28590108)
chr5 (433-561)||(14890037-14890165)
chr5 (448-561)||(9537302-9537416)
chr5 (363-499)||(19185886-19186026)
chr5 (493-577)||(9537842-9537926)
chr5 (513-584)||(8075641-8075711)
chr5 (404-499)||(31946754-31946849)
chr5 (454-576)||(32640541-32640662)
chr5 (460-577)||(544900-545015)
chr5 (454-563)||(14890911-14891019)
chr5 (454-576)||(25590683-25590804)
chr5 (460-576)||(40611513-40611628)
chr5 (454-576)||(2466522-2466643)
chr5 (406-499)||(13650936-13651029)
chr5 (391-452)||(21069954-21070014)
chr5 (464-576)||(28590872-28590982)
chr5 (401-499)||(19183266-19183363)
chr5 (462-563)||(27720725-27720827)
chr5 (688-745)||(10487806-10487863)
chr5 (525-577)||(30970295-30970347)
chr5 (524-574)||(21069540-21069590)
chr5 (580-637)||(10487647-10487704)
[»] chr8 (29 HSPs)
chr8 (405-577)||(5965121-5965293)
chr8 (423-561)||(10407301-10407439)
chr8 (423-561)||(1952702-1952833)
chr8 (400-481)||(41754503-41754584)
chr8 (449-561)||(32898188-32898300)
chr8 (423-561)||(35177662-35177799)
chr8 (454-563)||(10406457-10406565)
chr8 (447-569)||(28619274-28619395)
chr8 (507-562)||(5737814-5737869)
chr8 (428-499)||(28526269-28526340)
chr8 (281-355)||(33316111-33316186)
chr8 (652-747)||(38983566-38983661)
chr8 (652-747)||(39014663-39014758)
chr8 (454-576)||(35178554-35178675)
chr8 (580-637)||(10818135-10818192)
chr8 (449-581)||(5737110-5737241)
chr8 (667-747)||(10817911-10817991)
chr8 (652-747)||(38145873-38145969)
chr8 (425-555)||(32564200-32564330)
chr8 (580-638)||(38983730-38983788)
chr8 (580-638)||(39014827-39014885)
chr8 (404-450)||(33315172-33315218)
chr8 (446-499)||(28006316-28006369)
chr8 (446-499)||(28063619-28063672)
chr8 (513-574)||(32563828-32563889)
chr8 (425-501)||(28062995-28063071)
chr8 (513-561)||(41121370-41121418)
chr8 (580-637)||(38145746-38145803)
chr8 (513-574)||(41122572-41122633)
[»] chr1 (24 HSPs)
chr1 (391-577)||(6612682-6612868)
chr1 (391-561)||(6613667-6613837)
chr1 (447-578)||(51450271-51450402)
chr1 (423-561)||(32665494-32665632)
chr1 (454-576)||(7945323-7945444)
chr1 (454-563)||(9340789-9340897)
chr1 (423-558)||(7944422-7944565)
chr1 (405-561)||(34088158-34088312)
chr1 (464-561)||(52439729-52439826)
chr1 (406-574)||(25038133-25038300)
chr1 (406-574)||(25043345-25043512)
chr1 (423-490)||(52439832-52439898)
chr1 (454-576)||(52440309-52440430)
chr1 (688-745)||(9762250-9762307)
chr1 (513-562)||(23703954-23704003)
chr1 (686-747)||(39576542-39576603)
chr1 (391-445)||(534249-534303)
chr1 (580-633)||(39576381-39576434)
chr1 (423-467)||(9339965-9340009)
chr1 (507-559)||(22856953-22857005)
chr1 (652-743)||(24520734-24520826)
chr1 (514-562)||(34085794-34085842)
chr1 (524-563)||(11830179-11830218)
chr1 (425-499)||(11059971-11060045)
[»] chr4 (18 HSPs)
chr4 (406-577)||(19051058-19051226)
chr4 (86-166)||(53762145-53762225)
chr4 (652-747)||(13399741-13399836)
chr4 (460-576)||(54574678-54574793)
chr4 (423-557)||(42278313-42278446)
chr4 (426-561)||(47874823-47874957)
chr4 (461-576)||(42278759-42278873)
chr4 (507-573)||(6039377-6039443)
chr4 (421-577)||(4702914-4703068)
chr4 (513-562)||(20599701-20599750)
chr4 (449-499)||(21622844-21622894)
chr4 (688-745)||(18888831-18888888)
chr4 (426-499)||(24745754-24745827)
chr4 (429-490)||(24753257-24753318)
chr4 (391-456)||(6039484-6039549)
chr4 (580-637)||(18888992-18889049)
chr4 (513-574)||(19050488-19050549)
chr4 (85-141)||(53762100-53762157)
[»] chr3 (19 HSPs)
chr3 (423-561)||(36279212-36279350)
chr3 (423-561)||(52318042-52318180)
chr3 (423-561)||(48574177-48574314)
chr3 (454-576)||(36280066-36280187)
chr3 (454-576)||(55389218-55389339)
chr3 (426-561)||(55388327-55388464)
chr3 (652-747)||(27755680-27755774)
chr3 (514-576)||(2591879-2591941)
chr3 (454-576)||(48809405-48809525)
chr3 (426-499)||(17701649-17701721)
chr3 (454-576)||(17700772-17700893)
chr3 (461-563)||(52317180-52317280)
chr3 (455-576)||(48573238-48573361)
chr3 (461-576)||(53958858-53958970)
chr3 (580-638)||(27755843-27755901)
chr3 (652-745)||(32284692-32284786)
chr3 (525-577)||(36827282-36827334)
chr3 (655-747)||(39036687-39036779)
chr3 (425-486)||(40206392-40206453)
[»] chr6 (5 HSPs)
chr6 (400-499)||(30748317-30748416)
chr6 (426-577)||(31239687-31239838)
chr6 (406-479)||(31239054-31239127)
chr6 (525-562)||(29845785-29845822)
chr6 (525-562)||(29857050-29857087)
[»] scaffold0767 (2 HSPs)
scaffold0767 (461-577)||(5992-6104)
scaffold0767 (447-561)||(5870-5984)
[»] scaffold0040 (1 HSPs)
scaffold0040 (652-745)||(62229-62322)
[»] scaffold1938 (1 HSPs)
scaffold1938 (580-638)||(1159-1217)
[»] scaffold1954 (1 HSPs)
scaffold1954 (580-632)||(1159-1211)
[»] scaffold0237 (2 HSPs)
scaffold0237 (525-562)||(1990-2027)
scaffold0237 (525-562)||(3252-3289)


Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 86 - 631
Target Start/End: Complemental strand, 44530028 - 44529486
Alignment:
Q  86 atactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattctggtttgatatataatgctggtttgata 185  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44530028 atactatagcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattctggtttgatatataatgctggtttgata 44529929  T
Q  186 tataaatattggtttgatcaagtgtataaaattatggtttgatcatgtctatnnnnnnnnttatttgaacagttcaactgcagtgtgttagatataattt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||      
T  44529928 tataaatattggtttgatcaagtgtataaaattatggtttgatcatgtctataaaaaaaattatttgaacagttcaactgcagtgtgttagagataatga 44529829  T
Q  286 gttttaatttgttttaggcatgtcatgtgttcatgaatagcagccattgcatggaggcatgacaaacctgnnnnnnntattttggtatttaacacaatac 385  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  44529828 ---ttaatttgttttaggcatgtcatgtgttcatgaatagcagccattgcatggaggcatgacaaacctgaaaaaaatattttggtatttaacacaatac 44529732  T
Q  386 cttagtgtcactaggtagcatgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcac 485  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44529731 cttagtgtcactagatagcatgttaaactaacaatttgccagggactttagtgaaatttcgtgtttactgtcatggacttaaatgatagtaagtatgcac 44529632  T
Q  486 agtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatttagagatataa 585  Q
    |||||  ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  44529631 agtcagggacttaaaatgaagttgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggggtttaagatttagagatataa 44529532  T
Q  586 ttgatttaaattttatgattttacataactttggcattataaatat 631  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  44529531 ttgatttaaattttatgattttacataacgttggcattataaatat 44529486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 43459304 - 43459427
Alignment:
Q  33 ctacataccaaaaccagtgcaatatacttctgtcaatatgaatatgctctagtatactatggcagacttgatgtaattctaattttaatttagcaactac 132  Q
    ||||||||||||| || |||||||| ||||| |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43459304 ctacataccaaaagcaatgcaatattcttctctcaatatgaatatgctccggtatactatggcaaacttgatgtaattctaattttaatttagcaactac 43459403  T
Q  133 tatggcagatttgatatataaatt 156  Q
    ||||||||||||||||||||||||    
T  43459404 tatggcagatttgatatataaatt 43459427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 652 - 748
Target Start/End: Complemental strand, 44529439 - 44529343
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagtgat 748  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44529439 gcgacatatataaagttagacatttgtttgtgactcttgtcacaaattgatttaaagggtactaataatattttatttttaaaatgagtatagtgat 44529343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 561
Target Start/End: Original strand, 30924737 - 30924872
Alignment:
Q  426 agggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgat 525  Q
    |||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||  ||||||| |  |  ||| | ||||||||| |||    
T  30924737 agggactttagtgaaatttcgtgtttattgtcagggacctaactgatagtaagtatgcacagtcagagacctaacaataggttggtgtttaatggaagat 30924836  T
Q  526 tgattttgaacaaaagagataattagatgacattta 561  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30924837 tgattttgaacaaaaaagataattagatgacattta 30924872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 423 - 584
Target Start/End: Original strand, 48647160 - 48647321
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||||| |||  ||||||| |  |  ||| | |||||||||     
T  48647160 gccagggactttagtgaaatttcgtgtttactgtcagggacctaactaatagtaagtatgcacaatcaaggacctaacagtaggttggtgtttaatggaa 48647259  T
Q  523 gattgattttgaacaaaagagataattagatgacatttaggagtttgagatttagagatata 584  Q
    |||||||||||||||||| |||||||||||||| ||||| |  ||| |||||||| ||||||    
T  48647260 gattgattttgaacaaaatagataattagatgatatttaaggatttaagatttagggatata 48647321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 437 - 561
Target Start/End: Original strand, 7259424 - 7259548
Alignment:
Q  437 tgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaac 536  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||  ||||||| |  | |||||| |||||| || |||||||||||| |    
T  7259424 tgaaattttgtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaataatagattgatgtttaatagaagattgattttgagc 7259523  T
Q  537 aaaagagataattagatgacattta 561  Q
    |||| ||||||||||| ||||||||    
T  7259524 aaaaaagataattagaggacattta 7259548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 577
Target Start/End: Complemental strand, 35728072 - 35727950
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| |||||||||||||||||||||| ||| |||| |  |||||| | ||||||||| |||| ||||||||||||||||| ||||||||    
T  35728072 tgtcagggacctaactgatagtaagtatgcacagtcagtgatctaacaataaattg-tgtttaatggaagattaattttgaacaaaagagagaattagat 35727974  T
Q  554 gacatttaggagtttgagatttag 577  Q
    ||||||||||  ||||||||||||    
T  35727973 gacatttagggatttgagatttag 35727950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 423 - 586
Target Start/End: Original strand, 35728812 - 35728974
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    |||| |||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||| | ||  ||||| | |  |  |||   |||||||||     
T  35728812 gccaaggactttagtgaaatttcgtgtttactgtcagggacctgactgatagtaagtatgcac-gccagggacctcacagtaggttgcagtttaatggaa 35728910  T
Q  523 gattgattttgaacaaaagagataattagatgacatttaggagtttgagatttagagatataat 586  Q
    ||||||||||||||||||||||||||||||||||||||| |  ||| |||||||| ||| ||||    
T  35728911 gattgattttgaacaaaagagataattagatgacatttaaggatttaagatttagggatttaat 35728974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 576
Target Start/End: Complemental strand, 42477754 - 42477633
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||||||||||||||||  ||||||| || || ||| |  |||||||| |||| ||||||||||||||||| ||||||||    
T  42477754 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacattaagttg-tgcttaatggaagattaattttgaacaaaagagagaattagat 42477656  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  42477655 gacatttagggatttgagattta 42477633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 423 - 577
Target Start/End: Original strand, 44334176 - 44334329
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    |||| |||| |||||||||||||||||||||  ||| |||||||| |||||||||||||||||||| |  ||||||| |  |  ||| | ||||||| |     
T  44334176 gccaaggactttagtgaaatttcgtgtttacattcaaggacctaactgatagtaagtatgcacagt-aaggacctaatagtaggttggtgtttaatgaaa 44334274  T
Q  523 gattgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
     | |||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  44334275 taatgattttgaacaaaagagataattagatgacatttaagaatttaagatttag 44334329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 460 - 576
Target Start/End: Original strand, 45584251 - 45584367
Alignment:
Q  460 ggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatt 559  Q
    |||| ||| ||||||||||||||||||||||  ||||||| |  |  ||||| ||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  45584251 ggacttaactgatagtaagtatgcacagtcagggacctaacagtaggttgatgtttaatggaagattgattttgatcaaaaaagataattagatgacatt 45584350  T
Q  560 taggagtttgagattta 576  Q
    ||||  |||||||||||    
T  45584351 tagggatttgagattta 45584367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 418 - 561
Target Start/End: Original strand, 12223400 - 12223542
Alignment:
Q  418 aacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaa 517  Q
    |||||| |||||||||||| || | | | |||||| ||||| |||||||| |||||||||||||||||| |||  ||||||| |  || ||| | |||||    
T  12223400 aacttgtcagggaccttagcgagagtacatgtttagtgtcagggacctaa-tgatagtaagtatgcacattcagggacctaataataagttggtgtttaa 12223498  T
Q  518 tggatgattgattttgaacaaaagagataattagatgacattta 561  Q
    |||| |||||||||||||| |||||| |||||||||||||||||    
T  12223499 tggaagattgattttgaactaaagaggtaattagatgacattta 12223542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 29785834 - 29785776
Alignment:
Q  29 actcctacataccaaaaccagtgcaatatacttctgtcaatatgaatatgctctagtat 87  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  29785834 actcctacataccaaaaccagtgcaatatacttctgtcaatattaatatactctagtat 29785776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 455 - 577
Target Start/End: Complemental strand, 39708495 - 39708373
Alignment:
Q  455 gtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatg 554  Q
    |||| ||||| || ||||||||||||| ||||||||  ||||||| |  || || || ||||||||| ||| |||||||||||||||||| |||||||||    
T  39708495 gtcagggaccaaactgatagtaagtatacacagtcagggacctaacagtaagttaatgtttaatggaagatcgattttgaacaaaagagagaattagatg 39708396  T
Q  555 acatttaggagtttgagatttag 577  Q
    ||||||| || ||| ||||||||    
T  39708395 acatttaagaatttaagatttag 39708373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 454 - 577
Target Start/End: Complemental strand, 48646423 - 48646300
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataatt-aga 552  Q
    ||||| |||||||| ||||||||||||||||||||||  ||||||| |  || ||| | ||||||||| |||| ||||||||||||| ||| |||| |||    
T  48646423 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaagttg-tatttaatggaagattaattttgaacaaaaaagagaattaaga 48646325  T
Q  553 tgacatttaggagtttgagatttag 577  Q
    |||||||||||  ||||||||||||    
T  48646324 tgacatttagggatttgagatttag 48646300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 454 - 576
Target Start/End: Complemental strand, 7258648 - 7258528
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||||||||||||  ||||||||||||||||||| |  || |||| |  |||||| | ||||||||| |||| |||| |||||||||||| ||||||||    
T  7258648 tgtcatggacctaacagatagtaagtatgcacagttagggatctaacaataaattg-tgtttaatggaagattaattt-gaacaaaagagagaattagat 7258551  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  7258550 gacatttagggatttgagattta 7258528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 33607236 - 33607374
Alignment:
Q  425 cagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatga 524  Q
    |||||| |||||||| | | | |||||||| | |||||||||| |||||||||||||||| |||||  ||||||| |  |  | | | ||||||||| ||    
T  33607236 cagggatcttagtgacaatacatgtttactattatggacctaactgatagtaagtatgcaaagtcagggacctaacagtaggtaggtgtttaatggaaga 33607335  T
Q  525 ttgattttgaacaaaagagataattagatgacatttagg 563  Q
     ||||||| ||||||||||| ||||||||||||||||||    
T  33607336 atgattttaaacaaaagagagaattagatgacatttagg 33607374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 559
Target Start/End: Complemental strand, 45583954 - 45583856
Alignment:
Q  461 gacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatt 559  Q
    ||||||| |||||||||||||||| |||||  ||||||| |  || ||| | ||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  45583954 gacctaactgatagtaagtatgcatagtcagggacctaacagtaagttggtgtttaatggaagattgattttgatcaaaaaagataattagatgacatt 45583856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 406 - 559
Target Start/End: Original strand, 32794495 - 32794648
Alignment:
Q  406 tgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaa 505  Q
    |||||||||||||||||| ||||||| | ||||| | | | |  |||||||||  || |||| | ||||||||||||||||||||  ||||||| |  ||    
T  32794495 tgttaaactaacaacttgtcagggacttcagtgagagtacatacttactgtcagcgaactaattaatagtaagtatgcacagtcagggacctaacaataa 32794594  T
Q  506 attgatttttaatggatgattgattttgaacaaaagagataattagatgacatt 559  Q
     ||  | |||||||||  |||||||||||||||||||||  |||||||||||||    
T  32794595 gtttgtgtttaatggaaaattgattttgaacaaaagagagcattagatgacatt 32794648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 440 - 575
Target Start/End: Complemental strand, 10894732 - 10894596
Alignment:
Q  440 aatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaa 539  Q
    ||||| ||||||||||||| |||||||| || |||||||||||||||||||   |||||| || | |||| | |||||| || ||||||||||||| |||    
T  10894732 aattttgtgtttactgtcagggacctaactggtagtaagtatgcacagtcagatacctaacattagattggtgtttaatagaagattgattttgaaaaaa 10894633  T
Q  540 agagata-attagatgacatttaggagtttgagattt 575  Q
    | | | | ||||||||||||||| || ||| ||||||    
T  10894632 aaaaagatattagatgacatttaagaatttaagattt 10894596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 478 - 575
Target Start/End: Complemental strand, 43457820 - 43457721
Alignment:
Q  478 gtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaa--gagataattagatgacatttaggagtttgagattt 575  Q
    |||||||||||||  ||| |||||| || ||| | |||||| |||||||||||||||||||||  |||| |||||||||| ||||||| |||||||||||    
T  43457820 gtatgcacagtcaaggacttaaaataaagttggtgtttaattgatgattgattttgaacaaaagagagagaattagatgatatttaggggtttgagattt 43457721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 553
Target Start/End: Original strand, 44530294 - 44530492
Alignment:
Q  363 tattttggtatttaacacaataccttagtg---tcactaggtagcatgttaaactaacaacttgccagggacctt-agtgaaatttcgtgtttactgtca 458  Q
    ||||||||||||||||||||||| ||||||   ||| ||||||||||||||||   |||| |||  | | || || ||||||||||||| ||||||||||    
T  44530294 tattttggtatttaacacaatacgttagtgctgtcattaggtagcatgttaaatatacaa-ttgttatgaacttttagtgaaatttcgtatttactgtca 44530392  T
Q  459 tggacctaaatgatagtaagtatgc------acagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattaga 552  Q
     ||| ||||  |||||||||||||       ||| |||  || |||||||||| ||| ||||||||| |||||||||||||||| ||||||| |||||||    
T  44530393 -ggatctaacagatagtaagtatgggtatggacaatcaaagatctaaaatgaagttggtttttaatgaatgattgattttgaacgaaagagagaattaga 44530491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 48787684 - 48787613
Alignment:
Q  428 ggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    |||| |||||||||||| ||||||||||||| | |||||| ||||||||| |||||||||||| ||||||||    
T  48787684 ggactttagtgaaattttgtgtttactgtcaggaacctaactgatagtaaatatgcacagtcagtgacctaa 48787613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 447 - 577
Target Start/End: Original strand, 7509193 - 7509323
Alignment:
Q  447 tgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagata 546  Q
    |||||||||||||  | |||| ||||||||||||||||||||||  ||| ||| |  |  ||||| ||||||||| | |||||||||||||| ||||  |    
T  7509193 tgtttactgtcataaatctaactgatagtaagtatgcacagtcaaagacttaagagtacgttgatatttaatggaaggttgattttgaacaagagagtga 7509292  T
Q  547 attagatgacatttaggagtttgagatttag 577  Q
    |||| |||| |||||||  ||||||||||||    
T  7509293 attaaatgatatttagggatttgagatttag 7509323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 637
Target Start/End: Complemental strand, 271960 - 271903
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaat 637  Q
    |||||||| |||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  271960 atataattaatttaaattttatgattttaaataatcttggcattataaatattctaat 271903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 557
Target Start/End: Original strand, 48788430 - 48788526
Alignment:
Q  460 ggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgaca 557  Q
    |||||||| ||||||||||||||||||||||  ||||||| |  || ||| | ||||||||| |||| ||||||||||||||||| ||||| ||||||    
T  48788430 ggacctaactgatagtaagtatgcacagtcagggacctaacaataagttg-tgtttaatggaagattaattttgaacaaaagagagaattaaatgaca 48788526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 461 - 573
Target Start/End: Original strand, 10898829 - 10898940
Alignment:
Q  461 gacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattt 560  Q
    ||||||| ||||| |||||||||| |||||  ||||||| |  || ||| | ||||||||| |||| |||||||||||| |||| |||||||||||||||    
T  10898829 gacctaactgatactaagtatgcatagtcagggacctaacagtaagttg-tgtttaatggaagattaattttgaacaaatgagagaattagatgacattt 10898927  T
Q  561 aggagtttgagat 573  Q
    |||  ||||||||    
T  10898928 agggatttgagat 10898940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 44530066 - 44530028
Alignment:
Q  29 actcctacataccaaaaccagtgcaatatacttctgtca 67  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44530066 actcctacataccaaaaccagtgcaatatacttctgtca 44530028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 523 - 576
Target Start/End: Original strand, 6680338 - 6680391
Alignment:
Q  523 gattgattttgaacaaaagagataattagatgacatttaggagtttgagattta 576  Q
    |||||||||||||||||||||| |||||||||| |||||||  |||||||||||    
T  6680338 gattgattttgaacaaaagagagaattagatgatatttagggatttgagattta 6680391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 524 - 577
Target Start/End: Complemental strand, 34707917 - 34707864
Alignment:
Q  524 attgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    ||||||||||||||||||||| ||||| |||||||||| || ||||||||||||    
T  34707917 attgattttgaacaaaagagagaattatatgacatttaagaatttgagatttag 34707864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 447 - 574
Target Start/End: Complemental strand, 32793550 - 32793423
Alignment:
Q  447 tgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagata 546  Q
    |||||| |||||  || |||| |||||||||||||||||| |||  ||| || ||  || ||| | ||||||| | |||||||||||||||||| ||| |    
T  32793550 tgtttagtgtcagagatctaactgatagtaagtatgcacaatcagagacttacaaataagttggtatttaatgaaagattgattttgaacaaaatagaga 32793451  T
Q  547 attagatgacatttaggagtttgagatt 574  Q
    |||||| |||||| |||  |||||||||    
T  32793450 attagaagacattcaggtatttgagatt 32793423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 577
Target Start/End: Complemental strand, 8047149 - 8047079
Alignment:
Q  507 ttgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    ||||| ||||||| |  |||||| ||||||||||||||||||||||||| ||||||   ||||||||||||    
T  8047149 ttgatgtttaatgaaatattgatattgaacaaaagagataattagatgatatttagtgatttgagatttag 8047079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 471 - 561
Target Start/End: Original strand, 34710156 - 34710246
Alignment:
Q  471 atagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||| | |||||   |||||| |  |||||||| ||||||| |  ||| ||||||||||||||||| ||||||||||||||||    
T  34710156 atagtaagtatgtatagtcagatacctaacagtaaattgatgtttaatgaaaaattaattttgaacaaaagagagaattagatgacattta 34710246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 747
Target Start/End: Complemental strand, 647911 - 647815
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactcttgtcacaaattgattt-aaagggcactaataatattttatttttaaaatgagtatagtga 747  Q
    ||||||||| |||| | ||||| |||| | ||| ||||||||||||||| ||| ||||||  || |||||||||| |||| ||||||||||| ||||    
T  647911 gcgacatatttaaactaagacacttgtctatgattcttgtcacaaattgttttgaaagggtcctcataatattttgttttcaaaatgagtattgtga 647815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 576
Target Start/End: Complemental strand, 33061145 - 33061081
Alignment:
Q  513 tttaatggatgat-tgattttgaacaaaagagataattagatgacatttaggagtttgagattta 576  Q
    ||||||||| ||| ||||||||||||||||||||||||| || |||||||||  ||| |||||||    
T  33061145 tttaatggaagatatgattttgaacaaaagagataattaaataacatttagggatttaagattta 33061081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 557
Target Start/End: Original strand, 43461513 - 43461572
Alignment:
Q  497 taaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgaca 557  Q
    ||||||||| ||| | |||||||||||||||||||||||| ||| ||| ||||||||||||    
T  43461513 taaaatgaagttggtgtttaatggatgattgattttgaacgaaa-agagaattagatgaca 43461572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 562
Target Start/End: Complemental strand, 12221607 - 12221568
Alignment:
Q  523 gattgattttgaacaaaagagataattagatgacatttag 562  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  12221607 gattaattttgaacaaaagagagaattagatgacatttag 12221568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 24287863 - 24287797
Alignment:
Q  433 ttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    ||||||| |||  ||||||||||||| ||||| || |||||||||||||||| |||||  |||||||    
T  24287863 ttagtgacattaagtgtttactgtcagggaccaaactgatagtaagtatgcatagtcaaggacctaa 24287797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 637
Target Start/End: Complemental strand, 648038 - 647981
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaat 637  Q
    |||||||| |||||||||| ||||||||| |||    |||||||||||||||||||||    
T  648038 atataattaatttaaatttaatgattttaaatattcatggcattataaatattctaat 647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 7e-42; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 7076003 - 7076098
Alignment:
Q  61 tctgtcaatatgaatatgctctagtatactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaatt 156  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7076003 tctgtcaatataaatatgctcgagtatactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaatt 7076098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 423 - 561
Target Start/End: Complemental strand, 31090563 - 31090425
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||| |  |  ||| | |||||||||     
T  31090563 gccaaggactttagtgaaatttcgtgtttactgtcagggacctaaatgatagtaagtatgcacagtcaggaacctaatagtaggttggtgtttaatggaa 31090464  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  31090463 gattgattttgaacaaaagggataattagatgacattta 31090425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 433 - 561
Target Start/End: Complemental strand, 32765333 - 32765205
Alignment:
Q  433 ttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgatttt 532  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||| |  |  ||| | ||||||||| ||||||||||    
T  32765333 ttagtgaaatttcgtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaggttgctgtttaatggaagattgatttt 32765234  T
Q  533 gaacaaaagagataattagatgacattta 561  Q
    |||||||| ||||||||||||||||||||    
T  32765233 gaacaaaaaagataattagatgacattta 32765205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 423 - 561
Target Start/End: Complemental strand, 24458466 - 24458328
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| | |||||||||||||||| ||||| | |||||||| |||||||||||||||||||| |  ||||||| |  |  ||| | |||||||||     
T  24458466 gccagggacttaagtgaaatttcgtgttgactgtaagggacctaactgatagtaagtatgcacagtaagagacctaacagtaggttggtgtttaatggaa 24458367  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24458366 gattgattttgaacaaaaaagataattagatgacattta 24458328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 425 - 561
Target Start/End: Complemental strand, 2910504 - 2910368
Alignment:
Q  425 cagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatga 524  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||  ||||||| |  |  ||| | ||||||| | ||    
T  2910504 cagggactttagtgaaatttcgtgtttactgtcagggacctaactgatattaagtatgcacagtcagggacctaacagtaggttggtgtttaatgtaaga 2910405  T
Q  525 ttgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||||||  |||||| |||||||||||||    
T  2910404 ttgattttgaacaaacaagataactagatgacattta 2910368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 405 - 554
Target Start/End: Original strand, 39256713 - 39256862
Alignment:
Q  405 atgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatga 504  Q
    |||| ||||||||||||| |||  ||||||||||| | | ||| |||||||||| |||||||| | |||||||||||||||| |||  ||||||| |  |    
T  39256713 atgtaaaactaacaactttccaaagaccttagtgagagtgcgtatttactgtcagggacctaactaatagtaagtatgcacaatcagcgacctaacagta 39256812  T
Q  505 aattgatttttaatggatgattgattttgaacaaaagagataattagatg 554  Q
    | ||| ||||||||||| |||||| ||||||||||||||| |||||||||    
T  39256813 agttggtttttaatggaagattgactttgaacaaaagagagaattagatg 39256862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 576
Target Start/End: Original strand, 32766029 - 32766150
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||||||||||||||||  ||||||| |  || ||| | ||||||||| |||| ||||||||||||||||| ||||| ||    
T  32766029 tgtcagggacctaactgatagtaagtatgcacagtcagagacctaacaataagttg-tgtttaatggaagattaattttgaacaaaagagaaaattaaat 32766127  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  32766128 gacatttagggatttgagattta 32766150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 461 - 576
Target Start/End: Original strand, 2911244 - 2911357
Alignment:
Q  461 gacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattt 560  Q
    ||||||| ||||| ||||||||||||||||  ||||||| |  || ||| | ||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  2911244 gacctaactgata-taagtatgcacagtcagagacctaacagtaagttg-tgtttaatggaagattaattttgaacaaaagagagaattagatgacattt 2911341  T
Q  561 aggagtttgagattta 576  Q
    |||| |||||||||||    
T  2911342 aggaatttgagattta 2911357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 454 - 577
Target Start/End: Complemental strand, 39015379 - 39015257
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| ||||||||   |||||| |||||||||||||||||||||| |  || ||| | ||||||||| |||| ||||| ||||||||||| ||||||||    
T  39015379 tgtcagggacctaaccaatagtaggtatgcacagtcactgacctaacaataagttg-tgtttaatggaagattaattttaaacaaaagagagaattagat 39015281  T
Q  554 gacatttaggagtttgagatttag 577  Q
    ||||||||||  ||||||||||||    
T  39015280 gacatttagggatttgagatttag 39015257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 454 - 576
Target Start/End: Original strand, 31091276 - 31091397
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||||||||| ||||||  || |||| |  || ||| | ||||||| |||||| ||||||||||||||||| ||||||||    
T  31091276 tgtcagggacctaactgatagtaagtatgcgcagtcagagatctaacagtaagttg-tgtttaatgaatgattaattttgaacaaaagagagaattagat 31091374  T
Q  554 gacatttaggagtttgagattta 576  Q
    |||||||| |  |||||||||||    
T  31091375 gacatttacggatttgagattta 31091397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 497 - 573
Target Start/End: Complemental strand, 7073983 - 7073907
Alignment:
Q  497 taaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagat 573  Q
    |||||| || ||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||||  ||||||||    
T  7073983 taaaataaagttgatgtttaatggatgattgattttgaacgaaagagagaattagatgatatttagggatttgagat 7073907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 17329830 - 17329873
Alignment:
Q  141 atttgatatataaattctggtttgatatataatgctggtttgat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17329830 atttgatatataaattctggtttgatatataatgctggtttgat 17329873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 17329831 - 17329903
Alignment:
Q  161 tttgatatataa-tgctggtttgatatataaatattggtttgatcaagtgtataaaattatggtttgatcatgt 233  Q
    |||||||||||| | |||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||    
T  17329831 tttgatatataaattctggtttgatatataa-tgctggtttgatcaactgtataaaattatggtttgatcatgt 17329903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 586
Target Start/End: Original strand, 17330010 - 17330099
Alignment:
Q  497 taaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatttagagatataat 586  Q
    ||||||||| ||| | ||||||||||| ||| |||||||||||||||| ||||| |||||||| ||| |||||| |||||| ||| ||||    
T  17330010 taaaatgaagttggtgtttaatggatgcttggttttgaacaaaagagagaattatatgacattcaggggtttgaaatttagggatttaat 17330099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 33163254 - 33163311
Alignment:
Q  507 ttgatttttaatggatgattgattttgaacaaaagagataattagatgacatttagga 564  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  33163254 ttgatgtttaatggaagattgattttgaacacaagagataattatatgacatttagga 33163311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 461 - 576
Target Start/End: Original strand, 24459210 - 24459324
Alignment:
Q  461 gacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattt 560  Q
    ||||||| ||||||||||||||| |||| |  ||||||| |  || ||| | ||||||| | |||| ||||||||||||||||||||||||| |||||||    
T  24459210 gacctaactgatagtaagtatgcgcagttagggacctaacagtaagttg-tgtttaatgaaagattaattttgaacaaaagagataattagacgacattt 24459308  T
Q  561 aggagtttgagattta 576  Q
    |||  ||| |||||||    
T  24459309 agggatttcagattta 24459324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 574
Target Start/End: Complemental strand, 33162071 - 33162020
Alignment:
Q  523 gattgattttgaacaaaagagataattagatgacatttaggagtttgagatt 574  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  33162071 gattgattttgaacaaaagagataattagatgacatttaaggatttgagatt 33162020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 561
Target Start/End: Original strand, 39016111 - 39016246
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| | | |||| ||||||||||| |||||  ||||||| ||||||||| ||||||||||||  ||| |||   |   ||| | |||||||||     
T  39016111 gccagggacttcactgaagtttcgtgtttagtgtcagagacctaactgatagtaaatatgcacagtcagggacttaactagg--ttggtgtttaatggaa 39016208  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  39016209 gattg-ttttgaacaaaatagataattagatgacattta 39016246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 7412564 - 7412616
Alignment:
Q  524 attgattttgaacaaaagagataattagatgacatttaggagtttgagattta 576  Q
    ||||||||||||||||||||||||||| ||||||||||  | |||||||||||    
T  7412564 attgattttgaacaaaagagataattatatgacatttataaatttgagattta 7412616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 577
Target Start/End: Original strand, 12004776 - 12004828
Alignment:
Q  525 ttgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    ||||||||||||||||||||||||||||||| ||||| || ||||| ||||||    
T  12004776 ttgattttgaacaaaagagataattagatgagatttatgaatttgatatttag 12004828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 561
Target Start/End: Complemental strand, 14704313 - 14704265
Alignment:
Q  513 tttaatggatgattgattttgaacaaaagagataattagatgacattta 561  Q
    ||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  14704313 tttaatggaagattgattttgaacaaaaaatataattagatgacattta 14704265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 500
Target Start/End: Original strand, 12004546 - 12004620
Alignment:
Q  426 agggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaa 500  Q
    |||||||||||||| | |  ||||||||||||| | |||||| |||||||||||||||||| |||  ||||||||    
T  12004546 agggaccttagtgacagtaagtgtttactgtcaggaacctaactgatagtaagtatgcacaatcatagacctaaa 12004620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 747
Target Start/End: Complemental strand, 18340683 - 18340622
Alignment:
Q  686 tcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagtga 747  Q
    ||||||||||||||| |||||||||  || ||||| |||| |||| ||||||||||||||||    
T  18340683 tcttgtcacaaattgttttaaagggtcctcataattttttgttttcaaaatgagtatagtga 18340622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 561
Target Start/End: Original strand, 38984691 - 38984848
Alignment:
Q  405 atgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatga 504  Q
    ||||||||| ||||| ||||||  ||||||  ||| | | | |||||||| |||  ||||||| ||||| |||||||||||| |||  || |||| |  |    
T  38984691 atgttaaaccaacaagttgccaaagacctttttgagagtacatgtttactctcagagacctaactgataataagtatgcacaatcaaagatctaacaata 38984790  T
Q  505 aattgatttttaatggat-gattgattttgaacaaaagagataattagatgacattta 561  Q
    | ||| | ||||||| |  |||| ||||||||||||||||| ||||||||||||||||    
T  38984791 agttggtgtttaatgaaaagatttattttgaacaaaagagagaattagatgacattta 38984848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 576
Target Start/End: Original strand, 40000142 - 40000205
Alignment:
Q  513 tttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagattta 576  Q
    ||||||| | |||| ||||||||||||||||| |||||||||||| ||| |  |||||||||||    
T  40000142 tttaatgaaagattaattttgaacaaaagagagaattagatgacacttatggatttgagattta 40000205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 490
Target Start/End: Complemental strand, 15440906 - 15440864
Alignment:
Q  448 gtttactgtcatggacctaaatgatagtaagtatgcacagtca 490  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||    
T  15440906 gtttactgtcagggacctaactgataataagtatgcacagtca 15440864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 31442902 - 31442944
Alignment:
Q  446 gtgtttactgtcatggacctaaatgatagtaagtatgcacagt 488  Q
    ||||||||||||| |||||||| |||||||||||| |||||||    
T  31442902 gtgtttactgtcaaggacctaactgatagtaagtaagcacagt 31442944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 637
Target Start/End: Complemental strand, 18340844 - 18340787
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaat 637  Q
    |||||||| ||||||||||||  |||||| |||   ||||||||||||||||||||||    
T  18340844 atataattaatttaaattttaaaattttaaatattcttggcattataaatattctaat 18340787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 490
Target Start/End: Complemental strand, 18675504 - 18675463
Alignment:
Q  449 tttactgtcatggacctaaatgatagtaagtatgcacagtca 490  Q
    |||| ||||| |||||||| ||||||||||||||||||||||    
T  18675504 tttattgtcagggacctaactgatagtaagtatgcacagtca 18675463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 34582348 - 34582413
Alignment:
Q  425 cagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtca 490  Q
    ||||||||| ||||| | |  ||||||||| ||| |||||||| |||||||||||||||| |||||    
T  34582348 cagggacctaagtgacagtaagtgtttactatcagggacctaactgatagtaagtatgcatagtca 34582413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 38855941 - 38855994
Alignment:
Q  446 gtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    ||||||||||||| ||| |||| ||||||||||||||||| ||||  |||||||    
T  38855941 gtgtttactgtcagggaactaactgatagtaagtatgcactgtcagggacctaa 38855994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 423 - 577
Target Start/End: Complemental strand, 4593260 - 4593106
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||| |  |  ||| | ||||||| |     
T  4593260 gccagggactttagtgaaatttcgtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtatgttggtgtttaatgaaa 4593161  T
Q  523 gattgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  4593160 gattgattttgaacaaaagagataattagatgacatttaagaatttaagatttag 4593106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 425 - 577
Target Start/End: Original strand, 40612378 - 40612530
Alignment:
Q  425 cagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatga 524  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||| |  |  ||| | ||||||||| ||    
T  40612378 cagggactttagtgaaatttcgtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaggttggtgtttaatggaaga 40612477  T
Q  525 ttgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    ||||||||||||||||||||||||||||||| |||||||  ||| ||||||||    
T  40612478 ttgattttgaacaaaagagataattagatgatatttagggatttaagatttag 40612530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 423 - 561
Target Start/End: Complemental strand, 2465075 - 2464937
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||||  ||||||| |  |  ||| | |||||||||     
T  2465075 gccagggactttagtgaaatttcgtgtttactgtcagtgacctaactgatagtaaatatgcacagtcagggacctaacagtaggttggtgtttaatggaa 2464976  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  2464975 gattgactttgaacaaaaaagataattagatgacattta 2464937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 32641460 - 32641601
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||| ||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |  ||||||| |  |  ||| | |||||||||     
T  32641460 gccagagactttagtgaaatttcgtgtttactgtcaaggacctaactgataataagtatgcacagttagggacctaacagtaggttggtgtttaatggaa 32641559  T
Q  523 gattgattttgaacaaaagagataattagatgacatttagga 564  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  32641560 gattgattttgaacaaaaaagataattagatgacattaagga 32641601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 428 - 561
Target Start/End: Complemental strand, 8074851 - 8074718
Alignment:
Q  428 ggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattg 527  Q
    |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||  || |||| |  |  ||| | ||||||| | |||||    
T  8074851 ggactttagtgaaatttcgtgtttactgtcagggacctaacttatagtaagtatgcacagtcagggagctaacagtaggttggtgtttaatgtaagattg 8074752  T
Q  528 attttgaacaaaagagataattagatgacattta 561  Q
    |||||||||| |||||||||||||||||||||||    
T  8074751 attttgaacagaagagataattagatgacattta 8074718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 577
Target Start/End: Original strand, 4593858 - 4593980
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| ||| |||| ||||||||||||||||||||||  ||||||| || || || || ||||||||| |||| ||||||||||||||||||||||||||    
T  4593858 tgtcagggatctaactgatagtaagtatgcacagtcagggacctaacattaagtt-atgtttaatggaagattaattttgaacaaaagagataattagat 4593956  T
Q  554 gacatttaggagtttgagatttag 577  Q
    ||||||||||  ||||||||||||    
T  4593957 gacatttagggatttgagatttag 4593980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 423 - 561
Target Start/End: Original strand, 545761 - 545899
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| ||| |||||||||||||||||| ||| || ||||| ||||||||||||||||||||||  ||||||| |  |  ||  | |||||||||     
T  545761 gccagggactttattgaaatttcgtgtttactatcaggggcctaactgatagtaagtatgcacagtcagggacctaacagtaggttagtgtttaatggaa 545860  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  545861 gattgattcagaacaaaagagataattagatgacattta 545899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 423 - 540
Target Start/End: Complemental strand, 28590108 - 28589991
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||  ||||||| |  |  ||| | |||||||||     
T  28590108 gccagggactttagtgaaattttgtgtttactgtcagggacctaactgatagtaagtatgcacagtcagagacctaacagtaggttggtgtttaatggaa 28590009  T
Q  523 gattgattttgaacaaaa 540  Q
    ||||||||||||||||||    
T  28590008 gattgattttgaacaaaa 28589991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 433 - 561
Target Start/End: Complemental strand, 14890165 - 14890037
Alignment:
Q  433 ttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgatttt 532  Q
    ||||||||||||||||||||||||||  |||| || | |||||||||||||||| |||  ||||||| |  | |||| | ||||||||| ||||||||||    
T  14890165 ttagtgaaatttcgtgtttactgtcagagaccaaactaatagtaagtatgcacaatcagggacctaacagcagattggtgtttaatggaagattgatttt 14890066  T
Q  533 gaacaaaagagataattagatgacattta 561  Q
    |||||||||| |||| |||||||||||||    
T  14890065 gaacaaaagaaataactagatgacattta 14890037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 448 - 561
Target Start/End: Complemental strand, 9537416 - 9537302
Alignment:
Q  448 gtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaat-ggatgattgattttgaacaaaagagata 546  Q
    |||||||||||  ||||||||||||||||||||||||||||||  ||||||| |  || ||| | |||||| ||| |||||| ||||||||||||||| |    
T  9537416 gtttactgtcagagacctaaatgatagtaagtatgcacagtcaaggacctaatagtaagttggtgtttaatgggaagattgactttgaacaaaagagaga 9537317  T
Q  547 attagatgacattta 561  Q
    |||||||||||||||    
T  9537316 attagatgacattta 9537302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 363 - 499
Target Start/End: Original strand, 19185886 - 19186026
Alignment:
Q  363 tattttggtatttaacaca-ataccttagtgt---cactaggtagcatgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtca 458  Q
    ||||||||||||||||||| ||||||||||||   |  ||  |||||||||||||||| |||||| || ||| |||||| ||||||||| ||||||||||    
T  19185886 tattttggtatttaacacagataccttagtgttgtcggtaaatagcatgttaaactaaaaacttgtcaaggatcttagttaaatttcgtttttactgtca 19185985  T
Q  459 tggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
     |||||||| ||| ||||||||| || |||||  |||||||    
T  19185986 gggacctaactgacagtaagtatacaaagtcagagacctaa 19186026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 493 - 577
Target Start/End: Original strand, 9537842 - 9537926
Alignment:
Q  493 gacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    ||||||| || || ||||| ||||||||| ||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||    
T  9537842 gacctaacattaagttgatgtttaatggaagattgattttgaacaaaggagagaattagataacatttaggaatttgagatttag 9537926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 513 - 584
Target Start/End: Original strand, 8075641 - 8075711
Alignment:
Q  513 tttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatttagagatata 584  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  8075641 tttaatggaagattaattttgaacaaaagagagaattagatgacatttagga-tttgagatttagggatata 8075711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 404 - 499
Target Start/End: Original strand, 31946754 - 31946849
Alignment:
Q  404 catgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    ||||||||||||||||||||  |  ||  ||||||||||||||| |||||||||| |||||||||||| ||||||||| || ||||| ||||||||    
T  31946754 catgttaaactaacaacttgttaaagatgttagtgaaatttcgtttttactgtcagggacctaaatgacagtaagtatacagagtcagtgacctaa 31946849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 454 - 576
Target Start/End: Complemental strand, 32640662 - 32640541
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||| ||| |||||||||||||||||| |||  ||||||| |  || ||| | ||||||||| |||| |||||||| |||||||| ||||||||    
T  32640662 tgtcagggacataactgatagtaagtatgcacaatcaaggacctaacagtaagttg-tgtttaatggaagattaattttgaataaaagagagaattagat 32640564  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  32640563 gacatttagggatttgagattta 32640541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 460 - 577
Target Start/End: Complemental strand, 545015 - 544900
Alignment:
Q  460 ggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatt 559  Q
    |||||||| ||||||||||||||||||||||  ||||||| |  || ||| | ||||||| | |||| ||||||||||||||||||||||| ||||  ||    
T  545015 ggacctaactgatagtaagtatgcacagtcagggacctaacaataagttg-tgtttaatgaaagattaattttgaacaaaagagataattatatgatttt 544917  T
Q  560 taggagtttgagatttag 577  Q
    ||||| ||||||||||||    
T  544916 tagga-tttgagatttag 544900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 454 - 563
Target Start/End: Original strand, 14890911 - 14891019
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||| ||||||||||||  ||||||| |  || ||| | ||||||||| |||| |||||||||||||||||  |||||||    
T  14890911 tgtcagggacctaactgatagtaaatatgcacagtcagggacctaacaataagttg-tgtttaatggaagattaattttgaacaaaagagaggattagat 14891009  T
Q  554 gacatttagg 563  Q
    ||||||||||    
T  14891010 gacatttagg 14891019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 454 - 576
Target Start/End: Complemental strand, 25590804 - 25590683
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa-aatgaaattgatttttaatggatgattgattttgaacaaaagagataattaga 552  Q
    ||||| ||| |||| |||||||||||||||||||| |  ||||||| ||| | |||  | ||||||||| |||| ||||||||||||||||| |||||||    
T  25590804 tgtcagggatctaactgatagtaagtatgcacagttagggacctaacaataagatt--tgtttaatggaagattaattttgaacaaaagagagaattaga 25590707  T
Q  553 tgacatttaggagtttgagattta 576  Q
    ||||||||| |  |||||||||||    
T  25590706 tgacatttatggatttgagattta 25590683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 460 - 576
Target Start/End: Complemental strand, 40611628 - 40611513
Alignment:
Q  460 ggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatt 559  Q
    |||||||| |||||||||||||| |||||||  ||||||| |  || ||| | ||||||| | |||| ||||||||||||||||| ||||| ||||||||    
T  40611628 ggacctaactgatagtaagtatgtacagtcagggacctaacactaagttg-tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatt 40611530  T
Q  560 taggagtttgagattta 576  Q
    ||||  |||||||||||    
T  40611529 tagggatttgagattta 40611513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 454 - 576
Target Start/End: Original strand, 2466522 - 2466643
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||| ||| ||||||||||||||||||||||  ||||||| |  || ||| | |||||||||   || ||||||||||||| ||| ||||||||    
T  2466522 tgtcaaggacataactgatagtaagtatgcacagtcagagacctaacaataagttg-tgtttaatggagatttaattttgaacaaaaaagagaattagat 2466620  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  2466621 gacatttagggatttgagattta 2466643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 499
Target Start/End: Original strand, 13650936 - 13651029
Alignment:
Q  406 tgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    |||||||||||||||||| || ||||||| ||||| ||| || |||||| ||| |||||||| | |||||||||||||| |||||  |||||||    
T  13650936 tgttaaactaacaacttggcatggaccttggtgaagtttggtatttactatcaaggacctaactaatagtaagtatgcatagtcagggacctaa 13651029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 21070014 - 21069954
Alignment:
Q  391 tgtcactaggtagcatgttaaactaacaacttgccagggaccttagtgaaatttcgtgttta 452  Q
    |||||||||||||||||||||| |||||||||| || |||| ||||||||||||||| ||||    
T  21070014 tgtcactaggtagcatgttaaattaacaacttg-catggactttagtgaaatttcgtattta 21069954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 576
Target Start/End: Original strand, 28590872 - 28590982
Alignment:
Q  464 ctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatttagg 563  Q
    |||| ||||||||||||||||||||||  ||| ||| |  || ||| | ||||||||| |||| ||||||||||||| ||| ||||| ||||||||||||    
T  28590872 ctaactgatagtaagtatgcacagtcagggac-taacagtaagttg-tgtttaatggaagattaattttgaacaaaaaagagaattatatgacatttagg 28590969  T
Q  564 agtttgagattta 576  Q
      |||||||||||    
T  28590970 gatttgagattta 28590982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 401 - 499
Target Start/End: Complemental strand, 19183363 - 19183266
Alignment:
Q  401 tagcatgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    |||| |||||||||||||||||| ||  || |||||||||||||| | |||||||||| | || ||| ||| ||||||||| ||||||||  |||||||    
T  19183363 tagcgtgttaaactaacaacttgtcaaagatcttagtgaaatttcctttttactgtcaggaacttaactgacagtaagtat-cacagtcagggacctaa 19183266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 563
Target Start/End: Complemental strand, 27720827 - 27720725
Alignment:
Q  462 acctaaatgatagtaagtatgcacagtcactgacctaaaatgaaa-ttgatttttaatggatgattgattttgaacaaaagagataattagatgacattt 560  Q
    |||||| ||||| |||||||||||| | |  ||||||| |  ||| ||||| ||||||| | |||||||||||||||||||||| ||||| |||| ||||    
T  27720827 acctaactgataataagtatgcacaattagggacctaatagtaaagttgatgtttaatgaaagattgattttgaacaaaagagagaattatatgatattt 27720728  T
Q  561 agg 563  Q
    |||    
T  27720727 agg 27720725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 745
Target Start/End: Original strand, 10487806 - 10487863
Alignment:
Q  688 ttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagt 745  Q
    |||||| ||||||||||||||||  ||||||||||||| |||| || |||||||||||    
T  10487806 ttgtcataaattgatttaaagggtcctaataatattttgttttcaacatgagtatagt 10487863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 577
Target Start/End: Complemental strand, 30970347 - 30970295
Alignment:
Q  525 ttgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    |||||||||||||||| ||| ||||  ||||||||||||| ||||||||||||    
T  30970347 ttgattttgaacaaaatagagaattgtatgacatttaggaatttgagatttag 30970295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 21069590 - 21069540
Alignment:
Q  524 attgattttgaacaaaagagataattagatgacatttaggagtttgagatt 574  Q
    |||||||||||| |||| ||| ||||||||||||||||||  |||||||||    
T  21069590 attgattttgaagaaaatagagaattagatgacatttagggatttgagatt 21069540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 10487647 - 10487704
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaat 637  Q
    |||||||| |||||||||||| ||||||| |||   ||||||||||| ||||||||||    
T  10487647 atataattaatttaaattttacgattttaaatattcttggcattatatatattctaat 10487704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 405 - 577
Target Start/End: Original strand, 5965121 - 5965293
Alignment:
Q  405 atgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatga 504  Q
    ||||||||||||||||||| ||||||||||||||| | | | |||||||| ||| |||||||| ||||||||||||||||||||||  ||| ||| |  |    
T  5965121 atgttaaactaacaacttgtcagggaccttagtgagagtacatgtttactctcagggacctaattgatagtaagtatgcacagtcatggacttaacacta 5965220  T
Q  505 aattgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    | ||| | ||||||||| ||||||||||||||||||||||||||||||||||| |||||  ||| ||||||||    
T  5965221 agttggtgtttaatggaagattgattttgaacaaaagagataattagatgacacttagggatttaagatttag 5965293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 423 - 561
Target Start/End: Original strand, 10407301 - 10407439
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| || |||||||||||||||||||||||  ||| ||| |||||||||||||| |||||||| ||||||| |  |  ||| | |||||||||     
T  10407301 gccagggacttttgtgaaatttcgtgtttactgtcagtgacttaactgatagtaagtatgaacagtcacggacctaacaacaggttggtgtttaatggaa 10407400  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10407401 gattgattttgaacaaaagagataattagatgacattta 10407439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 423 - 561
Target Start/End: Original strand, 1952702 - 1952833
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||  |||    ||| |  ||| | |||||||||     
T  1952702 gccagggactttagtgaaatttcgtgtatactgtcagggacctaactgatagtaaatatgcacagtca--gac----aat-aggttgttgtttaatggaa 1952794  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1952795 gattgattttgaacaaaagagataattagatgacattta 1952833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 41754503 - 41754584
Alignment:
Q  400 gtagcatgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtat 481  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||| ||| |||||||||    
T  41754503 gtagcatgttaaactaacaacttgccaaggatcttagtgaaatttcgtgtttactgtaagggacctaactgacagtaagtat 41754584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 449 - 561
Target Start/End: Original strand, 32898188 - 32898300
Alignment:
Q  449 tttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataat 548  Q
    |||||||||| |||||||| ||||||||||||||||||||||  ||||||| |  |  ||| | ||||||||| ||||||| |||||||||| |||||||    
T  32898188 tttactgtcagggacctaactgatagtaagtatgcacagtcagagacctaacagtaggttggtgtttaatggaagattgatattgaacaaaaaagataat 32898287  T
Q  549 tagatgacattta 561  Q
    |||||||||||||    
T  32898288 tagatgacattta 32898300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 423 - 561
Target Start/End: Complemental strand, 35177799 - 35177662
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    |||||||||  ||||||||||| ||||||||||| | |||||||| |||||||||||||||| |||||  ||||||| |  |  ||| | ||| || ||     
T  35177799 gccagggactgtagtgaaattttgtgtttactgtaagggacctaactgatagtaagtatgcatagtcagggacctaacaataggttggtgttt-atagaa 35177701  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  35177700 gattgattttgaacaaaaaagataattaggtgacattta 35177662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 454 - 563
Target Start/End: Complemental strand, 10406565 - 10406457
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||||||||||||||||  ||||||| |  || ||| | |||||| || |||| ||||||||||||||||| ||||||||    
T  10406565 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacaataagttg-tgtttaatagaagattaattttgaacaaaagagagaattagat 10406467  T
Q  554 gacatttagg 563  Q
    ||||||||||    
T  10406466 gacatttagg 10406457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 447 - 569
Target Start/End: Original strand, 28619274 - 28619395
Alignment:
Q  447 tgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagata 546  Q
    |||||| |||||| |||||||||||||||||||||||||||| |  ||||||| |  || ||| | ||||||| | |||||||||| || |||| ||| |    
T  28619274 tgtttattgtcattgacctaaatgatagtaagtatgcacagttagagacctaatagtaagttg-tgtttaatgaaagattgatttttaataaaaaagaga 28619372  T
Q  547 attagatgacatttaggagtttg 569  Q
    |||||||||||||||||| ||||    
T  28619373 attagatgacatttaggaatttg 28619395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 5737814 - 5737869
Alignment:
Q  507 ttgatttttaatggatgattgattttgaacaaaagagataattagatgacatttag 562  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  5737814 ttgatgtttaatggaatattgattttgaacaaaagagataattagatgacatttag 5737869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 428 - 499
Target Start/End: Original strand, 28526269 - 28526340
Alignment:
Q  428 ggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    |||||||||||||| |  ||||||||||||| |||||||| ||||||||||||||||||||||  |||||||    
T  28526269 ggaccttagtgaaagtaagtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaa 28526340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 33316186 - 33316111
Alignment:
Q  281 aatttgttttaatttgttttaggcatgtcatgtgttcatg-aatagcagccattgcatggaggcatgacaaacctg 355  Q
    ||||||||| ||||| ||||||||||| |||||||| ||| ||||| ||||||||||||||||||| |||||||||    
T  33316186 aatttgtttgaattttttttaggcatgccatgtgtttatggaatagaagccattgcatggaggcataacaaacctg 33316111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 652 - 747
Target Start/End: Complemental strand, 38983661 - 38983566
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagtga 747  Q
    ||||||||| |||| ||||||| |||| | ||| | |||||||||||| ||||||||||  ||||||||||||| |||| |||||||| |||||||    
T  38983661 gcgacatatttaaacttagacacttgtctctgatttttgtcacaaattaatttaaagggtcctaataatattttgttttcaaaatgaggatagtga 38983566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 652 - 747
Target Start/End: Complemental strand, 39014758 - 39014663
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagtga 747  Q
    ||||||||| |||| ||||||| |||| | ||| | |||||||||||| ||||||||||  ||||||||||||| |||| |||||||| |||||||    
T  39014758 gcgacatatttaaacttagacacttgtctctgatttttgtcacaaattaatttaaagggtcctaataatattttgttttcaaaatgaggatagtga 39014663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 454 - 576
Target Start/End: Original strand, 35178554 - 35178675
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||| |||||||||| |  |||||||    || ||| | ||||||||| |||| ||||||||||||||||| ||||||||    
T  35178554 tgtcagggacctaattgatagtaaatatgcacagtgagggacctaacggtaagttg-tgtttaatggaagattaattttgaacaaaagagagaattagat 35178652  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  ||| |||||||    
T  35178653 gacatttagggattttagattta 35178675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 637
Target Start/End: Complemental strand, 10818192 - 10818135
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaat 637  Q
    ||||||||||||||||||||||||||||| ||||  || |||||||||||||||||||    
T  10818192 atataattgatttaaattttatgattttaaataatctttgcattataaatattctaat 10818135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 449 - 581
Target Start/End: Complemental strand, 5737241 - 5737110
Alignment:
Q  449 tttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataat 548  Q
    ||||||||||  || |||| |||||||||||| | |||||||  ||||||| |  || ||| | ||||||||| |||| |||||||| ||||| || |||    
T  5737241 tttactgtcagagatctaattgatagtaagta-gtacagtcagggacctaacaataagttggtgtttaatggaagattaattttgaaaaaaagggagaat 5737143  T
Q  549 tagatgacatttaggagtttgagatttagagat 581  Q
    |||||||||||||||  ||| ||||||||||||    
T  5737142 tagatgacatttagggatttcagatttagagat 5737110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 747
Target Start/End: Complemental strand, 10817991 - 10817911
Alignment:
Q  667 ttagacatttgtttgtgactcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagtga 747  Q
    |||||||||||| | | | |||||||||||||||||||||||||   |||||||||||| |||| |||||| |||||||||    
T  10817991 ttagacatttgtctctcattcttgtcacaaattgatttaaagggttgtaataatattttgttttcaaaatgcgtatagtga 10817911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 652 - 747
Target Start/End: Original strand, 38145873 - 38145969
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactcttgtcacaaattgatttaaagggcactaataatattttatttt-taaaatgagtatagtga 747  Q
    ||||||||| |||| ||||||| |||| | ||| ||||||||||||||||||||||||   ||||||||||||| ||||  |||||| |||||||||    
T  38145873 gcgacatatttaaacttagacacttgtctttgattcttgtcacaaattgatttaaaggttcctaataatattttgttttcaaaaatgcgtatagtga 38145969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 555
Target Start/End: Original strand, 32564200 - 32564330
Alignment:
Q  425 cagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatga 524  Q
    ||||||||||||||| | | |||||||| |||||  ||||||| ||||||||| ||| |||||||   || || | |  || ||| | ||||||||| ||    
T  32564200 cagggaccttagtgagagtacgtgtttattgtcagagacctaactgatagtaaatattcacagtccaagatcttacaataagttggtatttaatggaaga 32564299  T
Q  525 ttgattttgaacaaaagagataattagatga 555  Q
     ||||||||||||||||||| ||||||||||    
T  32564300 atgattttgaacaaaagagagaattagatga 32564330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 38983788 - 38983730
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaatt 638  Q
    |||||||| |||||||| ||||||||||| |||  ||||||||||||||||||||||||    
T  38983788 atataattaatttaaatcttatgattttaaatatttttggcattataaatattctaatt 38983730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 39014885 - 39014827
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaatt 638  Q
    |||||||| |||||||| ||||||||||| |||  ||||||||||||||||||||||||    
T  39014885 atataattaatttaaatcttatgattttaaatatttttggcattataaatattctaatt 39014827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 450
Target Start/End: Complemental strand, 33315218 - 33315172
Alignment:
Q  404 catgttaaactaacaacttgccagggaccttagtgaaatttcgtgtt 450  Q
    ||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  33315218 catgttaaactaacaacatgctagggaccttagtgaaattttgtgtt 33315172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 28006316 - 28006369
Alignment:
Q  446 gtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    ||||||||||||| |||||||| |||||||||||||||||| |||  |||||||    
T  28006316 gtgtttactgtcagggacctaactgatagtaagtatgcacaatcagggacctaa 28006369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 28063619 - 28063672
Alignment:
Q  446 gtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    ||||||||||||| |||||||| |||||||||||||||||| |||  |||||||    
T  28063619 gtgtttactgtcagggacctaactgatagtaagtatgcacaatcagggacctaa 28063672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 574
Target Start/End: Complemental strand, 32563889 - 32563828
Alignment:
Q  513 tttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatt 574  Q
    |||||| || |||| ||||||||||||||||| ||||||||| ||||||||  |||||||||    
T  32563889 tttaatagaagattaattttgaacaaaagagagaattagatggcatttagggatttgagatt 32563828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 501
Target Start/End: Complemental strand, 28063071 - 28062995
Alignment:
Q  425 cagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaa 501  Q
    ||||||||||||||| | |  ||||||||||| | |||||||| |||| ||||||||||||||| |  |||||||||    
T  28063071 cagggaccttagtgacactgagtgtttactgttaaggacctaactgattgtaagtatgcacagttagggacctaaaa 28062995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 561
Target Start/End: Complemental strand, 41121418 - 41121370
Alignment:
Q  513 tttaatggatgattgattttgaacaaaagagataattagatgacattta 561  Q
    ||||||| | |||||||||||||||||||||| ||||||||| ||||||    
T  41121418 tttaatgaaagattgattttgaacaaaagagagaattagatggcattta 41121370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 38145746 - 38145803
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaat 637  Q
    |||||||  |||||||||||||||||||  |||   ||||||||||||||||||||||    
T  38145746 atataataaatttaaattttatgattttcaatattcttggcattataaatattctaat 38145803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 574
Target Start/End: Original strand, 41122572 - 41122633
Alignment:
Q  513 tttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatt 574  Q
    ||||||||| ||||||||||||||||||||   |||||  || ||||||||| |||||||||    
T  41122572 tttaatggaagattgattttgaacaaaagacgaaattatgtgtcatttaggaatttgagatt 41122633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 7e-39; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 391 - 577
Target Start/End: Complemental strand, 6612868 - 6612682
Alignment:
Q  391 tgtcactaggtagcatgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtca 490  Q
    ||||| |||||||||||||||| ||||||||| | |||||||||||||||||||| | |||||| ||| |||||||| |||||||||||||||||||| |    
T  6612868 tgtcagtaggtagcatgttaaattaacaacttactagggaccttagtgaaatttcatatttactttcagggacctaactgatagtaagtatgcacagtta 6612769  T
Q  491 ctgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
      || | || |  || ||| | ||||||||| |||||||||| ||||||| ||| ||||||||||||||||||  ||||||||||||    
T  6612768 aagatcaaacagtaagttggtgtttaatggaagattgattttaaacaaaaaagagaattagatgacatttagggatttgagatttag 6612682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 391 - 561
Target Start/End: Original strand, 6613667 - 6613837
Alignment:
Q  391 tgtcactaggtagcatgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtca 490  Q
    ||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||||| | |||    
T  6613667 tgtcagtaggtagcatgttaaactaacaacttgtcatggactttagtgaaatttcgtgtttactgtcgtggacctaactgataataagtatgcataatca 6613766  T
Q  491 ctgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattta 561  Q
      ||| ||| |  || ||||| |||||| ||  |||||||||| |||||||||| ||||| ||||||||||    
T  6613767 gggacttaatagtaagttgatgtttaatagaaaattgattttgtacaaaagagagaattatatgacattta 6613837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 447 - 578
Target Start/End: Complemental strand, 51450402 - 51450271
Alignment:
Q  447 tgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagata 546  Q
    |||||||||| | |||||||| |||||||||||||||||| | |  ||||||| |  || ||| | ||||||||| ||||||||||||||||||||||||    
T  51450402 tgtttactgttagggacctaactgatagtaagtatgcacactaagagacctaatagtaagttggtgtttaatggaagattgattttgaacaaaagagata 51450303  T
Q  547 attagatgacatttaggagtttgagatttaga 578  Q
    ||||||||||| ||| |  |||||||||||||    
T  51450302 attagatgacacttacggatttgagatttaga 51450271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 423 - 561
Target Start/End: Original strand, 32665494 - 32665632
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| ||  ||||||  ||||||| |  |  ||| | || ||| ||     
T  32665494 gccagggactttagtgaaatttcatgtttactgtcagggacctaactgatagtaagtgtgtgcagtcagggacctaacagtaggttggtgttgaatagaa 32665593  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  32665594 gattgattttgaacaaaaaagataattagatgacattta 32665632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 576
Target Start/End: Original strand, 7945323 - 7945444
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||||||||||||||||  ||||||| |  || ||| | ||||||||| |||| ||||||||||||||||| ||||| ||    
T  7945323 tgtcagggacctaactgatagtaagtatgcacagtcagagacctaacaataagttg-tgtttaatggaagattaattttgaacaaaagagagaattatat 7945421  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  7945422 gacatttagggatttgagattta 7945444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 454 - 563
Target Start/End: Original strand, 9340789 - 9340897
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||||||||||||||||  ||||||| |  || ||| | ||||||||| |||| ||||||||||||||||| ||||||||    
T  9340789 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaagttg-tgtttaatggaagattaattttgaacaaaagagaaaattagat 9340887  T
Q  554 gacatttagg 563  Q
    ||||||||||    
T  9340888 gacatttagg 9340897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 423 - 558
Target Start/End: Complemental strand, 7944565 - 7944422
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaa---tgaaa-----ttgatttt 514  Q
    |||| |||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||  |||||||||   | | |     ||| | ||    
T  7944565 gccatggactttagtgaaatttcatgtttactgtcagggacctaactgatagtaagtatgcacattcagagacctaaaaaactaacaataggttggtgtt 7944466  T
Q  515 taatggatgattgattttgaacaaaagagataattagatgacat 558  Q
    ||||||| ||||||||||||| |||| |||||||||||||||||    
T  7944465 taatggaagattgattttgaataaaaaagataattagatgacat 7944422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 405 - 561
Target Start/End: Original strand, 34088158 - 34088312
Alignment:
Q  405 atgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatga 504  Q
    ||||||||| ||||| ||| || || ||||||||| | | | |||||| | |||||||||||| ||||||||||||||||||||||  || |||| |  |    
T  34088158 atgttaaacgaacaatttgacatgggccttagtgagaatacatgtttattatcatggacctaactgatagtaagtatgcacagtca--gatctaacagta 34088255  T
Q  505 aattgatttttaatggatgattgattttgaacaaaagagataattagatgacattta 561  Q
    | || || |||| |||| |||| ||||||||||||||||| |||||||| |||||||    
T  34088256 agttaatgtttagtggaagattaattttgaacaaaagagagaattagataacattta 34088312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 464 - 561
Target Start/End: Complemental strand, 52439826 - 52439729
Alignment:
Q  464 ctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattta 561  Q
    |||| ||||||||||||||| ||||||  ||||||| |  |  ||| | ||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  52439826 ctaattgatagtaagtatgcgcagtcagggacctaacagtaggttggtgtttaatggaagattgattttgaacaaaaaagataattagatgacattta 52439729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 406 - 574
Target Start/End: Complemental strand, 25038300 - 25038133
Alignment:
Q  406 tgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaa 505  Q
    ||||||||||||||||||| ||||||||||| || | | | |||||| |||||   ||| || |||||||||||||||||||| |  ||||||| |  ||    
T  25038300 tgttaaactaacaacttgctagggaccttagcgagagtacatgtttaatgtcagacacccaactgatagtaagtatgcacagtaagggacctaacaataa 25038201  T
Q  506 attgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatt 574  Q
     |||  | |||||||| ||||| | |||||||||||| | ||||| ||||| ||||||  |||||||||    
T  25038200 gttg-gtgttaatggaagattgttcttgaacaaaagaaagaattatatgacttttagggatttgagatt 25038133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 406 - 574
Target Start/End: Complemental strand, 25043512 - 25043345
Alignment:
Q  406 tgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaa 505  Q
    ||||||||||||||||||| ||||||||||| || | | | |||||| |||||   ||| || |||||||||||||||||||| |  ||||||| |  ||    
T  25043512 tgttaaactaacaacttgctagggaccttagcgagagtacatgtttaatgtcagacacccaactgatagtaagtatgcacagtaagggacctaacaataa 25043413  T
Q  506 attgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatt 574  Q
     |||  | |||||||| ||||| | |||||||||||| | ||||| ||||| ||||||  |||||||||    
T  25043412 gttg-gtgttaatggaagattgttcttgaacaaaagaaagaattatatgacttttagggatttgagatt 25043345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 52439898 - 52439832
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtca 490  Q
    |||||| || |||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||    
T  52439898 gccaggaactttagtgaaatttcgtgtttactgtcagggacctaactgataat-agtatgcacagtca 52439832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 576
Target Start/End: Original strand, 52440309 - 52440430
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||||||||| ||||    ||||||| |  || ||| | ||||||| | |||| ||||| ||||||||||| ||||||||    
T  52440309 tgtcaaggacctaactgatagtaagtatgcgcagttggggacctaacactaagttg-tgtttaatgaaagattaattttaaacaaaagagagaattagat 52440407  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  52440408 gacatttagggatttgagattta 52440430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 745
Target Start/End: Complemental strand, 9762307 - 9762250
Alignment:
Q  688 ttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagt 745  Q
    |||||| ||||||||||||||||  |||||||||||||||||| || |||||||||||    
T  9762307 ttgtcaaaaattgatttaaagggttctaataatattttattttcaatatgagtatagt 9762250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 513 - 562
Target Start/End: Complemental strand, 23704003 - 23703954
Alignment:
Q  513 tttaatggatgattgattttgaacaaaagagataattagatgacatttag 562  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  23704003 tttaatggaaaattaattttgaacaaaagagataattagatgacatttag 23703954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 747
Target Start/End: Original strand, 39576542 - 39576603
Alignment:
Q  686 tcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagtga 747  Q
    |||||||||||||||||||||||||   ||||||||||||  ||| ||||||||||||||||    
T  39576542 tcttgtcacaaattgatttaaagggtcataataatattttggtttcaaaatgagtatagtga 39576603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 534249 - 534303
Alignment:
Q  391 tgtcactaggtagcatgttaaactaacaacttgccagggaccttagtgaaatttc 445  Q
    ||||| || |||||||||||||||||||||||| || ||| ||||||||||||||    
T  534249 tgtcaataagtagcatgttaaactaacaacttgtcaaggatcttagtgaaatttc 534303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 633
Target Start/End: Original strand, 39576381 - 39576434
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattc 633  Q
    |||||||| |||| ||||||||||||||| ||||  ||||||||||||||||||    
T  39576381 atataattaattttaattttatgattttaaataatcttggcattataaatattc 39576434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 9340009 - 9339965
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaa 467  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  9340009 gccagggactttagtgaaattttgtgtttactgtcagggacctaa 9339965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 22857005 - 22856953
Alignment:
Q  507 ttgatttttaatggatgattgattttgaacaaaagagataattagatgacatt 559  Q
    ||||| ||||||| | |||||||||| ||||||||||| ||||||||||||||    
T  22857005 ttgatgtttaatgaaagattgatttttaacaaaagagagaattagatgacatt 22856953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 743
Target Start/End: Complemental strand, 24520826 - 24520734
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactctt-gtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtata 743  Q
    ||||||| | |||| |||||||||||| | ||| | || ||||||||||||||| |||||  ||||||||||||| |||| || |||||||||    
T  24520826 gcgacatttttaaacttagacatttgtctctgattttttgtcacaaattgatttgaagggtcctaataatattttgttttcaatatgagtata 24520734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 562
Target Start/End: Complemental strand, 34085842 - 34085794
Alignment:
Q  514 ttaatggatgattgattttgaacaaaagagataattagatgacatttag 562  Q
    |||| ||| |||||||||||||||||||| | |||||||||||||||||    
T  34085842 ttaaaggaagattgattttgaacaaaagaaagaattagatgacatttag 34085794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 563
Target Start/End: Complemental strand, 11830218 - 11830179
Alignment:
Q  524 attgattttgaacaaaagagataattagatgacatttagg 563  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  11830218 attgattttgaacagaagagataattagatgagatttagg 11830179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 499
Target Start/End: Complemental strand, 11060045 - 11059971
Alignment:
Q  425 cagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    ||||||||||||| | | |  ||||||||||||| |||| ||| ||||| |||||||| ||||||| ||||||||    
T  11060045 cagggaccttagtaacaataagtgtttactgtcagggacataactgataataagtatgtacagtcaatgacctaa 11059971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 406 - 577
Target Start/End: Original strand, 19051058 - 19051226
Alignment:
Q  406 tgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaa 505  Q
    |||||||||||||||||||||| ||||||||||| | | | ||||||||||||  ||||||| ||||||||| ||||||||||||  ||||||| |  ||    
T  19051058 tgttaaactaacaacttgccagagaccttagtgagagtacatgtttactgtcagagacctaactgatagtaaatatgcacagtcagggacctaacaataa 19051157  T
Q  506 attgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
     ||||   |||||||| |||||||||||||||||||||  || ||||||||||||||   ||||||||||||    
T  19051158 gttga---ttaatggaagattgattttgaacaaaagagcgaactagatgacatttagagatttgagatttag 19051226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 53762145 - 53762225
Alignment:
Q  86 atactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattctggtttgat 166  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53762145 atactatggcagactagatgtcattctaattttaatttagcaactactatggaagatttgatatataaattctggtttgat 53762225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 652 - 747
Target Start/End: Complemental strand, 13399836 - 13399741
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagtga 747  Q
    |||||||||||||| ||| ||| |||||| | | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  13399836 gcgacatatataaacttatacacttgtttctcattcttgtcacaaattgatttaaagggtactgataatattttatttttaaaatgagtatcgtga 13399741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 576
Target Start/End: Complemental strand, 54574793 - 54574678
Alignment:
Q  460 ggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacatt 559  Q
    |||||||| |||||||||||||||||||| |  ||||||| |  || ||| | ||||||||| |||| ||||||||| ||||||| ||||||||||||||    
T  54574793 ggacctaactgatagtaagtatgcacagttagggacctaacagtaagttg-tgtttaatggaagattaattttgaactaaagagagaattagatgacatt 54574695  T
Q  560 taggagtttgagattta 576  Q
    ||||  |||||||||||    
T  54574694 tagggatttgagattta 54574678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 423 - 557
Target Start/End: Complemental strand, 42278446 - 42278313
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| |||||||||||| ||||||||| ||| |||||||| ||||||||| |||||  |||||  ||||||| |  |  ||| | |||||||||     
T  42278446 gccagggactttagtgaaattttgtgtttactatcagggacctaactgatagtaaatatgcttagtcagggacctaacagtaggttggtgtttaatggaa 42278347  T
Q  523 gattgattttgaacaaaagagataattagatgaca 557  Q
    |||| ||||||||||||| |||| |||||||||||    
T  42278346 gatttattttgaacaaaaaagat-attagatgaca 42278313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 561
Target Start/End: Complemental strand, 47874957 - 47874823
Alignment:
Q  426 agggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgat 525  Q
    |||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||  ||||||  ||||||| |  |  ||| | ||||||||| |||    
T  47874957 agggactttagtgaa-tttcgtgtttactgtcagggacccaactgatagtaagtatgttcagtcagggacctaacagtaggttg-tgtttaatggaagat 47874860  T
Q  526 tgattttgaac-aaaagagataattagatgacattta 561  Q
    ||||||||||| |||| ||||||||| ||||||||||    
T  47874859 tgattttgaacaaaaaaagataattatatgacattta 47874823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 461 - 576
Target Start/End: Original strand, 42278759 - 42278873
Alignment:
Q  461 gacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattt 560  Q
    ||||||| ||||||||||||||||||| ||  ||||||| |  || | | | ||||||||| |||| ||||||||||||||||| ||||| |||||||||    
T  42278759 gacctaactgatagtaagtatgcacagccagagacctaacagtaagtcg-tgtttaatggaagattaattttgaacaaaagagagaattatatgacattt 42278857  T
Q  561 aggagtttgagattta 576  Q
    |||  |||||||||||    
T  42278858 agggatttgagattta 42278873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 507 - 573
Target Start/End: Complemental strand, 6039443 - 6039377
Alignment:
Q  507 ttgatttttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagat 573  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||  ||||||||    
T  6039443 ttgatgtttaatggaagattgattttgaacaaaagagagaattatatgacatttagggatttgagat 6039377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 577
Target Start/End: Original strand, 4702914 - 4703068
Alignment:
Q  421 ttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatgg 520  Q
    |||||| |||||||||||| |   | ||||||||| ||  || |||| ||||| ||||||| ||||||||  ||  ||| |  || ||||| ||||||||    
T  4702914 ttgccaaggaccttagtgagagaacatgtttactgacaatgatctaattgataataagtatacacagtcagggatataacagtaagttgatgtttaatgg 4703013  T
Q  521 atgattgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    | |||||||||||||||||||||  ||||| ||||||||||||  ||||||||||||    
T  4703014 aagattgattttgaacaaaagag--aattaaatgacatttagggatttgagatttag 4703068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 513 - 562
Target Start/End: Original strand, 20599701 - 20599750
Alignment:
Q  513 tttaatggatgattgattttgaacaaaagagataattagatgacatttag 562  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  20599701 tttaatggaagattgattttgaacaaaagagagaattagatgacatttag 20599750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 449 - 499
Target Start/End: Original strand, 21622844 - 21622894
Alignment:
Q  449 tttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    ||||||||||||||||||| |||||||||||||||||| |||  |||||||    
T  21622844 tttactgtcatggacctaactgatagtaagtatgcacaatcatggacctaa 21622894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 745
Target Start/End: Complemental strand, 18888888 - 18888831
Alignment:
Q  688 ttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagt 745  Q
    ||||||||||||||||||||||   ||||||||||||| |||| || |||||||||||    
T  18888888 ttgtcacaaattgatttaaaggatcctaataatattttgttttcaatatgagtatagt 18888831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 24745754 - 24745827
Alignment:
Q  426 agggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    |||||||||||||| | |  ||||||||||||| |||||||| ||||||||| ||| ||||||||  |||||||    
T  24745754 agggaccttagtgacagtaagtgtttactgtcagggacctaactgatagtaattatacacagtcagggacctaa 24745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 490
Target Start/End: Original strand, 24753257 - 24753318
Alignment:
Q  429 gaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtca 490  Q
    ||||||||||| | |  ||||||||||||| |||||||| ||||||||| ||||||||||||    
T  24753257 gaccttagtgacagtaagtgtttactgtcagggacctaactgatagtaattatgcacagtca 24753318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 6039549 - 6039484
Alignment:
Q  391 tgtcactaggtagcatgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgt 456  Q
    ||||| |||||| ||||||||||||||||| ||  | |||| |||||||||||| ||||||| |||    
T  6039549 tgtcagtaggtaacatgttaaactaacaacatgttaaggactttagtgaaattttgtgtttattgt 6039484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 637
Target Start/End: Complemental strand, 18889049 - 18888992
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaat 637  Q
    |||||||| || ||||||||| ||||||| |||   ||||||||||||||||||||||    
T  18889049 atataattaatctaaattttacgattttaaatattcttggcattataaatattctaat 18888992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 574
Target Start/End: Complemental strand, 19050549 - 19050488
Alignment:
Q  513 tttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagatt 574  Q
    |||||||||  ||||||||||||||||| ||| | ||||||| ||||||||  |||||||||    
T  19050549 tttaatggaaaattgattttgaacaaaaaagagatttagatggcatttagggatttgagatt 19050488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 53762100 - 53762157
Alignment:
Q  85 tatactatggcagacttgatgtaattctaattttaatttag-caactactatggcaga 141  Q
    ||||||||||||||||||||||||||||  |||| ||| || ||| ||||||||||||    
T  53762100 tatactatggcagacttgatgtaattctggtttttattcagccaaatactatggcaga 53762157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 423 - 561
Target Start/End: Complemental strand, 36279350 - 36279212
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    |||||| || |||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||  ||||||| |  |  ||| | |||||||||     
T  36279350 gccaggaactttagtgaaattttgtgtttactttcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaggttggtgtttaatggaa 36279251  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  36279250 gattgattttgaacaaaaaagataattagatgactttta 36279212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 423 - 561
Target Start/End: Original strand, 52318042 - 52318180
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||| ||| || |||||||||| |||||||||||| |||||||| |||||||||||||||||||| |  ||||||| |  |  ||| | |||||||||     
T  52318042 gccagtgacttttgtgaaatttcatgtttactgtcagggacctaactgatagtaagtatgcacagttaaagacctaacaataggttggtgtttaatggaa 52318141  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  52318142 gattgattttgaacaaaaaagataattagatgacattta 52318180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 423 - 561
Target Start/End: Original strand, 48574177 - 48574314
Alignment:
Q  423 gccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggat 522  Q
    ||||||||| |||||||| |||| ||||| ||||||  ||||||| ||||||||||||||||||||||  ||||||| |  |  ||  | ||||||||||    
T  48574177 gccagggactttagtgaa-tttcatgtttcctgtcagagacctaactgatagtaagtatgcacagtcagggacctaacaataggttagtgtttaatggat 48574275  T
Q  523 gattgattttgaacaaaagagataattagatgacattta 561  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  48574276 gattgattttgaacaaaaaagataattatatgacattta 48574314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 576
Target Start/End: Original strand, 36280066 - 36280187
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| ||||||||| ||||||||||||  ||||||| || || ||| | ||||||||| |||| ||||||||||||||||| ||||| ||    
T  36280066 tgtcagggacctaactgatagtaattatgcacagtcagggacctaacattaagttg-tgtttaatggaagattaattttgaacaaaagagagaattaaat 36280164  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  36280165 gacatttagggatttgagattta 36280187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 576
Target Start/End: Original strand, 55389218 - 55389339
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    |||||||||||||| ||||||||| ||||||||||||  ||||||| |  || ||| | |||||||||  ||| ||||||||||||||||| ||||||||    
T  55389218 tgtcatggacctaactgatagtaaatatgcacagtcagggacctaagagtaagttg-tgtttaatggaatattaattttgaacaaaagagagaattagat 55389316  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  55389317 gacatttagggatttgagattta 55389339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 426 - 561
Target Start/End: Complemental strand, 55388464 - 55388327
Alignment:
Q  426 agggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgat 525  Q
    |||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||   || ||| |  |  ||| | |||||| ||  ||    
T  55388464 agggactttagtgaaatttcatgtttactgtcagggacctaactgatagtaagtatgcacagtcaggaacttaacagtaggttggtgtttaatagaatat 55388365  T
Q  526 tgattttgaac--aaaagagataattagatgacattta 561  Q
    |||||||||||  |||| ||||||||||||||||||||    
T  55388364 tgattttgaacaaaaaaaagataattagatgacattta 55388327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 652 - 747
Target Start/End: Complemental strand, 27755774 - 27755680
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagtga 747  Q
    ||||||||| |||| ||||||| |||| | | | |||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||||    
T  27755774 gcgacatatttaaacttagacacttgtctctaattcttgtcacaaattgatttaaaggtc-ctaataatattttgttttcaaaatgagtatagtga 27755680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 576
Target Start/End: Complemental strand, 2591941 - 2591879
Alignment:
Q  514 ttaatggatgattgattttgaacaaaagagataattagatgacatttaggagtttgagattta 576  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||    
T  2591941 ttaatggatgattgattttgaacaaaagagagaattagatgacatttagagatttgagattta 2591879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 454 - 576
Target Start/End: Original strand, 48809405 - 48809525
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| |||||||||||||||||||| |  ||||||| |  |||||| | ||||||||| |||| |||| |||||||| ||| ||||||||    
T  48809405 tgtcagggacctaactgatagtaagtatgcacagttagggacctaacaataaattg-tgtttaatggaagattaattt-gaacaaaatagagaattagat 48809502  T
Q  554 gacatttaggagtttgagattta 576  Q
    ||||||||||  |||||||||||    
T  48809503 gacatttagggatttgagattta 48809525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 17701649 - 17701721
Alignment:
Q  426 agggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    |||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||  |||||||    
T  17701649 agggactttagtgaa-tttcgtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaa 17701721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 454 - 576
Target Start/End: Complemental strand, 17700893 - 17700772
Alignment:
Q  454 tgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagat 553  Q
    ||||| |||||||| |||||||||||||| |||||||  ||||||| |  || ||| | ||||||||| |||| ||||||||||||| ||| ||||| ||    
T  17700893 tgtcagggacctaactgatagtaagtatgtacagtcagggacctaacagtaagttg-tgtttaatggaagattaattttgaacaaaatagagaattatat 17700795  T
Q  554 gacatttaggagtttgagattta 576  Q
    |||||||| |  |||||||||||    
T  17700794 gacatttaaggatttgagattta 17700772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 461 - 563
Target Start/End: Complemental strand, 52317280 - 52317180
Alignment:
Q  461 gacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattt 560  Q
    ||||||| |||| |||||||||||||| ||  ||||||| |  |||||| | ||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  52317280 gacctaactgattgtaagtatgcacag-cagggacctaacagtaaattg-tgtttaatggaagattaattttgaacaaaagagagaattagatgacattt 52317183  T
Q  561 agg 563  Q
    |||    
T  52317182 agg 52317180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 455 - 576
Target Start/End: Complemental strand, 48573361 - 48573238
Alignment:
Q  455 gtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgattt--ttaatggatgattgattttgaacaaaagagataattaga 552  Q
    |||||| |||||| |||||||||||||| |||||||  ||||||| |  || ||| | |  |||||||| | || |||||||| |||||||| |||||||    
T  48573361 gtcatgcacctaactgatagtaagtatgtacagtcagggacctaacagtaagttgttgtgtttaatggaaggttaattttgaataaaagagagaattaga 48573262  T
Q  553 tgacatttaggagtttgagattta 576  Q
    |||||||||||  |||||||||||    
T  48573261 tgacatttagggatttgagattta 48573238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 461 - 576
Target Start/End: Original strand, 53958858 - 53958970
Alignment:
Q  461 gacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattt 560  Q
    ||||||| ||||||||||||||||||||||  ||||| | |  || ||| | ||||||||| |||| |||| |||||||||||| |||||||||||||||    
T  53958858 gacctaactgatagtaagtatgcacagtcagggaccttacaacaagttg-tgtttaatggaagattaattt-gaacaaaagagagaattagatgacattt 53958955  T
Q  561 aggagtttgagattta 576  Q
    | || |||||||||||    
T  53958956 aaga-tttgagattta 53958970  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 27755901 - 27755843
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaatt 638  Q
    |||||||| |||||||| ||||||||||| |||  ||||||||||||||||||||||||    
T  27755901 atataattaatttaaatcttatgattttaaatatttttggcattataaatattctaatt 27755843  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 745
Target Start/End: Complemental strand, 32284786 - 32284692
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactctt-gtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagt 745  Q
    ||||||||| |||| ||||||| |||| | ||| | || |||||||||||||||||| ||  ||||||||||||| |||| || |||||||||||    
T  32284786 gcgacatatttaaatttagacacttgtctctgattttttgtcacaaattgatttaaatggtcctaataatattttgttttcaatatgagtatagt 32284692  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 577
Target Start/End: Original strand, 36827282 - 36827334
Alignment:
Q  525 ttgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    |||||||||||||||||||| |||||| ||||||||| |  ||||||||||||    
T  36827282 ttgattttgaacaaaagagagaattagttgacatttaaggatttgagatttag 36827334  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 655 - 747
Target Start/End: Complemental strand, 39036779 - 39036687
Alignment:
Q  655 acatatataaagttagacatttgtttgtgactcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagtga 747  Q
    |||||| |||| ||||||| |||| | ||| |||||||||| ||||||||||||||  || ||||| |||| ||||  ||||| |||||||||    
T  39036779 acatatttaaacttagacacttgtctttgattcttgtcacagattgatttaaagggtcctgataatgttttgttttcgaaatgcgtatagtga 39036687  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 486
Target Start/End: Complemental strand, 40206453 - 40206392
Alignment:
Q  425 cagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcaca 486  Q
    ||||||||||||| | | |  ||||||||||| | |||||||| ||||||||||||||||||    
T  40206453 cagggaccttagtaacagtaagtgtttactgttagggacctaactgatagtaagtatgcaca 40206392  T

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Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 400 - 499
Target Start/End: Complemental strand, 30748416 - 30748317
Alignment:
Q  400 gtagcatgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaa 499  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||| | | ||||||||| ||||||||  |||||||    
T  30748416 gtagcatgttaaactaacaacttgctaaggatcttagtgaaatttcgtgtttactgtcagggacctaactaacagtaagtatacacagtcagggacctaa 30748317  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 31239687 - 31239838
Alignment:
Q  426 agggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgat 525  Q
    ||||| |||||||| | | | ||||||| |||| || | ||| ||||||||||||||||||||||| || |||| |  || ||| | ||||||| |  ||    
T  31239687 agggatcttagtgagagtacatgtttaccgtcaggggcgtaattgatagtaagtatgcacagtcacagatctaacagtaagttgttgtttaatgaaaaat 31239786  T
Q  526 tgattttgaacaaaagagataattagatgacatttaggagtttgagatttag 577  Q
    | ||||||||||||||||| ||||||| || ||||| |  ||||||||||||    
T  31239787 taattttgaacaaaagagagaattagacgatatttaaggatttgagatttag 31239838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 479
Target Start/End: Complemental strand, 31239127 - 31239054
Alignment:
Q  406 tgttaaactaacaacttgccagggaccttagtgaaatttcgtgtttactgtcatggacctaaatgatagtaagt 479  Q
    ||||||| ||||||||| |||||||||||||||||| |   |||||| ||||| |||||||| || ||||||||    
T  31239127 tgttaaaataacaactttccagggaccttagtgaaagtatatgtttaatgtcaaggacctaactgctagtaagt 31239054  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 29845822 - 29845785
Alignment:
Q  525 ttgattttgaacaaaagagataattagatgacatttag 562  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  29845822 ttgattttgaacaaaagagataattaaatgagatttag 29845785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 29857087 - 29857050
Alignment:
Q  525 ttgattttgaacaaaagagataattagatgacatttag 562  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  29857087 ttgattttgaacaaaagagataattaaatgagatttag 29857050  T

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Target: scaffold0767 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 461 - 577
Target Start/End: Original strand, 5992 - 6104
Alignment:
Q  461 gacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagataattagatgacattt 560  Q
    ||||||| |||||||||||||||||||     ||||||| |  || ||| | |||||| || |||||||||||||||||||||||||||| |||||||||    
T  5992 gacctaactgatagtaagtatgcacagg----gacctaacagtaagttggtgtttaattgaagattgattttgaacaaaagagataattatatgacattt 6087  T
Q  561 aggagtttgagatttag 577  Q
    |||  ||||||||||||    
T  6088 agggatttgagatttag 6104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 447 - 561
Target Start/End: Complemental strand, 5984 - 5870
Alignment:
Q  447 tgtttactgtcatggacctaaatgatagtaagtatgcacagtcactgacctaaaatgaaattgatttttaatggatgattgattttgaacaaaagagata 546  Q
    |||||||||||| ||||||||   |||||||| |||||||||||  ||||||  |  ||   | | ||||||||| |||||||||||||||||||||| |    
T  5984 tgtttactgtcagggacctaacatatagtaagcatgcacagtcagagacctatgagtaagacggtgtttaatggaagattgattttgaacaaaagagaga 5885  T
Q  547 attagatgacattta 561  Q
    |||||||||||||||    
T  5884 attagatgacattta 5870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 652 - 745
Target Start/End: Original strand, 62229 - 62322
Alignment:
Q  652 gcgacatatataaagttagacatttgtttgtgactcttgtcacaaattgatttaaagggcactaataatattttatttttaaaatgagtatagt 745  Q
    ||||||||| |||| ||||||| |||| | ||| | |||||||||||||||||||||||  |||||||||||||||||| || || ||||||||    
T  62229 gcgacatatttaaacttagacacttgtctctgatttttgtcacaaattgatttaaagggtcctaataatattttattttcaatataagtatagt 62322  T

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Target: scaffold1938 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1938
Description:

Target: scaffold1938; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 1159 - 1217
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatattctaatt 638  Q
    |||||||| |||||||| ||||||||||| |||  ||||||||||||||||||||||||    
T  1159 atataattaatttaaatcttatgattttaaatatttttggcattataaatattctaatt 1217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1954 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1954
Description:

Target: scaffold1954; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 632
Target Start/End: Original strand, 1159 - 1211
Alignment:
Q  580 atataattgatttaaattttatgattttacataactttggcattataaatatt 632  Q
    |||||||| |||||||| ||||||||||| |||  ||||||||||||||||||    
T  1159 atataattaatttaaatcttatgattttaaatatttttggcattataaatatt 1211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 2027 - 1990
Alignment:
Q  525 ttgattttgaacaaaagagataattagatgacatttag 562  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  2027 ttgattttgaacaaaagagataattaaatgagatttag 1990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 3289 - 3252
Alignment:
Q  525 ttgattttgaacaaaagagataattagatgacatttag 562  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  3289 ttgattttgaacaaaagagataattaaatgagatttag 3252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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