View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8635_3 (Length: 466)
Name: NF8635_3
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8635_3 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 3350403 - 3350702
Alignment:
| Q |
22 |
catcatcattggtccgagtagaaatagacagaagagagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgagttgg |
121 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
3350403 |
catcatcattagtccgagtagaaatagacagaagagagtagcttgcaagcaagcgtaacatacggtcgagccgatttggcaaatcagagtgttgagttgg |
3350502 |
T |
|
| Q |
122 |
taactttgaagcaatttcaatggctgacttgaatccatcaccaatgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaa |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
3350503 |
taagtttgaagcaatttcaatggctgacttgaatccatccccaatgatttcaaacaagttgagttgaattgcagcattaagaactgctggaaacaccaaa |
3350602 |
T |
|
| Q |
222 |
ttggaacctagtaccatggctgagagtgtctcattgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattggaataggaactca |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3350603 |
ttggaacctagtaccatggctgagagtgtctcattgtcatctatttgtggggtgtgagtttcaacaacatggttcactttgtcattggaattggaactca |
3350702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 3372528 - 3372834
Alignment:
| Q |
22 |
catcatcattggtccgagtagaaatagacagaagagagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgagttgg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||| |
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|
| T |
3372528 |
catcatcattggtccgagtagaaatagacagaagagagtagcttgcaagcaatcgaaacatgcgatcgagcctattcggtaaatcagaatgttgtgttgg |
3372627 |
T |
|
| Q |
122 |
taactttgaagcaatttcaatggctgacttgaatc------------catcaccaatgatttcaaacaagttgagttgaattgcagcattaagaactgca |
209 |
Q |
| |
|
|| ||||||||||||||||| || |||| |||||| ||| | | ||||| ||||| || ||||||| ||||||||| |||||||||||| |
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|
| T |
3372628 |
tagctttgaagcaatttcaaaggatgacatgaatccaccattactttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgca |
3372727 |
T |
|
| Q |
210 |
gggaaaaccaaattggaacctagtaccatggctgagagtgtctcattgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattgg |
309 |
Q |
| |
|
|| || |||| ||| | ||| |||||||| || |||||||| ||||||||||||||||||||||||||| |||||| ||||| ||| |||| ||||||| |
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| T |
3372728 |
ggaaacaccatatttgcaccaagtaccatagcagagagtgtatcattgtcatctatttgtggggtgtgacattcaaccacatgattctctttctcattgg |
3372827 |
T |
|
| Q |
310 |
aatagga |
316 |
Q |
| |
|
|||||| |
|
|
| T |
3372828 |
tatagga |
3372834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 3361777 - 3362083
Alignment:
| Q |
22 |
catcatcattggtccgagtagaaatagacagaagagagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgagttgg |
121 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||||| || || ||||| |
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|
| T |
3361777 |
catcatcattggtccgagaagaaacagacagaagagagtagcttgcaagcaatcgaaacatgcgatcaagcctattcggtaaatcagaatgctgtgttgg |
3361876 |
T |
|
| Q |
122 |
taactttgaagcaatttcaatggctgacttgaatcca------------tcaccaatgatttcaaacaagttgagttgaattgcagcattaagaactgca |
209 |
Q |
| |
|
|| ||||||||||||||||| || |||| |||||||| | | ||||||| ||||| || | ||||| ||||||||| |||||||||||| |
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| T |
3361877 |
tagctttgaagcaatttcaaaggatgacatgaatccaccattactttccttagcaatgatatcaaataaatggagttcaattgcagcgttaagaactgca |
3361976 |
T |
|
| Q |
210 |
gggaaaaccaaattggaacctagtaccatggctgagagtgtctcattgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattgg |
309 |
Q |
| |
|
|| || |||| ||| | ||| |||||||| || |||||||| ||||||||||||||||||||||||||| |||||| ||||| ||| |||| ||||||| |
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|
| T |
3361977 |
ggaaacaccatatttgcaccaagtaccatagcagagagtgtatcattgtcatctatttgtggggtgtgagattcaaccacatgattctctttctcattgg |
3362076 |
T |
|
| Q |
310 |
aatagga |
316 |
Q |
| |
|
|||||| |
|
|
| T |
3362077 |
tatagga |
3362083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 51 - 318
Target Start/End: Original strand, 3299452 - 3299731
Alignment:
| Q |
51 |
agaagagagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgagttggtaactttgaagcaatttcaatggctgact |
150 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3299452 |
agaagagagtagctagctagcatgcgcaacatacgatctaacctatttggcaagtcagagtgttgagttggtaactttgaagcaatttcaaaggctgaca |
3299551 |
T |
|
| Q |
151 |
tgaa---tccatcac---------caatgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccat |
238 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||||| |||||| || |||||||||||||| || |||| ||||| |||||| ||||| |
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|
| T |
3299552 |
tgaaatcaccattactttccttagcaatgatttcaaacaagttgagttcaattgcggcgttaagaactgcaggaaacaccatattggcacctagcaccat |
3299651 |
T |
|
| Q |
239 |
ggctgagagtgtctcattgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattggaataggaac |
318 |
Q |
| |
|
|||| |||| || ||| | |||||||||||||| ||| | |||| || | || |||| |||| ||||| |||||||||| |
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|
| T |
3299652 |
ggctaagagggtatcactatcatctatttgtggagtgaaagtttccactatattgttctctttctcatttgaataggaac |
3299731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 163 - 318
Target Start/End: Original strand, 3390839 - 3390994
Alignment:
| Q |
163 |
caatgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctgagagtgtctcattgtcatc |
262 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |||| ||||||||| || |||| ||||||||||| | ||||||| |||| || || | ||||| |
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|
| T |
3390839 |
caatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtaccactatcatc |
3390938 |
T |
|
| Q |
263 |
tatttgtggggtgtgattttcaacaacatggttcactttgtcattggaataggaac |
318 |
Q |
| |
|
||||||||||||| || |||| || ||||||||| |||| ||||||| |||||||| |
|
|
| T |
3390939 |
tatttgtggggtgagagtttccactacatggttctctttatcattggtataggaac |
3390994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 3405185 - 3405297
Alignment:
| Q |
163 |
caatgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctgagagtgtctcattgtcatc |
262 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |||| ||||||||| || |||| ||||| |||||| | ||||||| |||| || ||| | ||||| |
|
|
| T |
3405185 |
caatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggcacctagaatcatggctaagagggtatcactatcatc |
3405284 |
T |
|
| Q |
263 |
tatttgtggggtg |
275 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
3405285 |
tatttgtagggtg |
3405297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 3405017 - 3405137
Alignment:
| Q |
22 |
catcatcattggtccgagtagaaatagacagaagagagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgag---t |
118 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| || ||| || |||||||||| |||||| || |||||||| || || || |||| ||||| | |
|
|
| T |
3405017 |
catcatcattggtccgagtggaactagacagaagaccgtggctagcaagcaagcgtagcatacggtccagcctatttggtaagtcggagtattgagttat |
3405116 |
T |
|
| Q |
119 |
tggtaactttgaagcaatttc |
139 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3405117 |
tggtaactttgaagcaatttc |
3405137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 3347182 - 3347274
Alignment:
| Q |
219 |
aaattggaacctagtaccatggctgagagtgtctcattgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattggaa |
311 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||| ||| | ||||||||||||||||||||| ||||| ||||||| |||| ||||||||| |
|
|
| T |
3347182 |
aaattggcacctagcaccatagctgagagtgtatcactatcatctatttgtggggtgtgagattcaatttcatggttttctttctcattggaa |
3347274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 321
Target Start/End: Original strand, 20721126 - 20721381
Alignment:
| Q |
78 |
aacatacgatcgagcctattcggcaaatcagagtgttgagttggtaactttgaagcaatttcaatggctgacttgaatccatcac------caatgattt |
171 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| ||||||||||||||||||||| |||||||||| ||| ||| | |||||| || ||||||| | |
|
|
| T |
20721126 |
aacatacggtcgagtctatttggtaaatcggagtgttgagttggtaactttaaagcaatttcgtaggccgacataaatccaccattactagcaatgatat |
20721225 |
T |
|
| Q |
172 |
caaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctgagagtgtctcatt---gtcat---ctat |
265 |
Q |
| |
|
|||| || ||||| | ||||||||||||||||| |||||| ||||||| | | |||||||| ||||| || | ||||| | | | ||||| |||| |
|
|
| T |
20721226 |
caaataatttgagctcaattgcagcattaagaattgcaggaaaaaccatagtagaacctagaaccatagcaggaagtgtattactactgtcatgatctat |
20721325 |
T |
|
| Q |
266 |
ttgtggggtgtgattttcaacaacatggttcactttgtcattggaataggaactca |
321 |
Q |
| |
|
|||||| |||||| |||| |||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
20721326 |
ttgtggagtgtgaatttctacaacatggttctctttgccattggaataggaactca |
20721381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 211
Target Start/End: Complemental strand, 23993094 - 23992916
Alignment:
| Q |
42 |
gaaatagacagaagagagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgagttggtaactttgaagcaatttcaa |
141 |
Q |
| |
|
|||| ||| |||||||||||||| || |||| || || | ||||||||| ||||| || || || ||||||||| ||||||| |||||||||||||||| |
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|
| T |
23993094 |
gaaacagaaagaagagagtagctagcaagcacgcacaaaacacgatcgagtctatttggtaagtcggagtgttgatttggtaagtttgaagcaatttcaa |
23992995 |
T |
|
| Q |
142 |
tggctgacttgaatccatc---------accaatgatttcaaacaagttgagttgaattgcagcattaagaactgcagg |
211 |
Q |
| |
|
| | ||| | |||||||| | ||||||| ||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
23992994 |
agacagacataaatccatcattgctggtagcaatgatatcaaataatttgagttcaattgcagcattaagaactgcagg |
23992916 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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