View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8635_4 (Length: 445)
Name: NF8635_4
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8635_4 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 49 - 416
Target Start/End: Complemental strand, 9485891 - 9485524
Alignment:
| Q |
49 |
aaattaacaacgttaacatcaccatatggaacatcggtatgatccacaaaattaccatcacgaaaacaagacaaatatttatcaactaacaataactcac |
148 |
Q |
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| T |
9485891 |
aaattaacaacgttaacatcaccatatggaacatcggtatgatccacaaaattaccatcacgaaaacaagacaaatatttatcaactaacaataactcac |
9485792 |
T |
|
| Q |
149 |
catcactctccactaaaaatttcttatcacccccaaacacaggctcagccaccaaatccaaacttaaatccggtctcaacgcaacagtcctaccggtacc |
248 |
Q |
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| T |
9485791 |
catcactctccactaaaaatttcttatctcccccaaacacaggctcagccaccaaatccaaacttaaatccggtctcaacgcaacagtcctaccggtacc |
9485692 |
T |
|
| Q |
249 |
atcaaccgcaaccggcctccctttaaatacacaaacatcatcaaaaggcgacggcatttcaggtacaatcgtccaccgctcatcaccacatcgaaaaaac |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9485691 |
atcaaccgcaaccggcctccctttaaatacacaaacatcatcaaaaggtgacggcatttcaggtacaatcgtccaccgctcatcaccacatcgaaaaaac |
9485592 |
T |
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| Q |
349 |
gcaattttcccagaaatatgaatagtgaaaagaaccgaacaacgctctttacctccccacatgtcagc |
416 |
Q |
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| T |
9485591 |
gcaattttcccagaaatatgaatagtgaaaagaaccgaacaacgctctttacctccccacatgtcagc |
9485524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 383
Target Start/End: Original strand, 13864396 - 13864663
Alignment:
| Q |
116 |
aagacaaatatttatcaactaacaataactcaccatcactctccactaaaaatttcttatcacccccaaacacaggctcagccaccaaatccaaacttaa |
215 |
Q |
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|||| ||||| |||||||||| ||| |||||||||||||||||||| || ||||| ||| | || ||||||||| ||| |||||||| ||||| ||||| |
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| T |
13864396 |
aagaaaaatacttatcaactagcaacaactcaccatcactctccaccaagaattttttacctccatcaaacacagcctctgccaccaactccaagcttaa |
13864495 |
T |
|
| Q |
216 |
atccgg-tctcaacgcaacagtcctaccggtaccatcaaccgcaaccggcctccctttaaatacacaaacatcatcaaaaggcgacggcatttcaggtac |
314 |
Q |
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| T |
13864496 |
gtccggctct-accgtgacagtcctaccggtgccatcgacagcaataggctgcccattgaagacacatacatcatcaaaaggcatcggcaattcaggaat |
13864594 |
T |
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| Q |
315 |
aatcgtccaccgctcatcaccacatcgaaaaaacgcaattttcccagaaatatgaatagtgaaaagaac |
383 |
Q |
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| T |
13864595 |
tatcgtccacagttcatcaccacttggtaaaattgcaagttttccagaaacatgaatagtgagaagaac |
13864663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 23205242 - 23205368
Alignment:
| Q |
123 |
atatttatcaactaacaataactcaccatcactctccactaaaaatttcttatcacccccaaa------cacaggctcagccaccaaatccaaacttaaa |
216 |
Q |
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|||||||| ||||| ||| ||||| |||| ||| || ||||| ||||||||||| |||||||| ||||| ||| || ||||||||||||| |||| |
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| T |
23205242 |
atatttatgaactagcaacaactccccattactatctactaataatttcttatctcccccaaacacacccacagactctgcaaccaaatccaaacctaaa |
23205341 |
T |
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| Q |
217 |
tccggtctcaacgcaacagtcctaccg |
243 |
Q |
| |
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||||||| | ||||||||||| |||| |
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|
| T |
23205342 |
tccggtcctaccgcaacagtccgaccg |
23205368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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