View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8635_5 (Length: 374)
Name: NF8635_5
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8635_5 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 4691666 - 4691411
Alignment:
| Q |
11 |
acaagaatcaaatttacaaagcttgaaagtggtatatatgcaaataatcaaggttatataataacgaaattgctaacaaatatctttatgatattgttta |
110 |
Q |
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| T |
4691666 |
acaaaaatcaaatttacaaagcttgaaagtggtatatatgcaaataatcaaggttatataataacgaaaatgctaacaattacctttatcatattgttta |
4691567 |
T |
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| Q |
111 |
agtatacaaccaaaagtagtgttggtttgattttcgtaacttttttattttatcacagctggcagtaggttaagtttctttcaatatgacataaaccatc |
210 |
Q |
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| T |
4691566 |
agcatacatccaaaagtagtgttggtttgatttttgtaacttttttattttatcacagctggcagtaggttaagtttctttcaatatgacataaaccatc |
4691467 |
T |
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| Q |
211 |
ttaattatatttttctattttgattaagtatttcacaagacttattcttattgatg |
266 |
Q |
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| T |
4691466 |
ttaattatatttttctattttgattaagtatttcacaagagttattcttattgatg |
4691411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 4691345 - 4691304
Alignment:
| Q |
333 |
tcttctactttagttacaacaagcttatatgattaatgagat |
374 |
Q |
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| T |
4691345 |
tcttctactttagttacaacaagcttatatgattaatgagat |
4691304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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