View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8635_low_1 (Length: 650)
Name: NF8635_low_1
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8635_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 13 - 558
Target Start/End: Original strand, 7931563 - 7932108
Alignment:
| Q |
13 |
gagatgaaagggggaaaagtaacagaagaaggttttggagaagagccgttaaattgttgcttttcaatttgcaaatgcaaatgtcactttcttcttcttc |
112 |
Q |
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| T |
7931563 |
gagatgaaagggggaaaagtaacagaagaaggttttggagaagagccgttaaattgttgcttttcaatttgcaaatgcaaatgtcactttcttcttcttc |
7931662 |
T |
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| Q |
113 |
tcttcattttatgctaccaagtaactctactactagtgaccgagtgagtgagtgagtgattagggtgaccaaattacggcttaattataactagccttaa |
212 |
Q |
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| T |
7931663 |
tcttcattttatgctaccaagtaactctactactagtgaccgagtgagtgagtga----ttagggtgaccaaattacggcttaattataactagccttaa |
7931758 |
T |
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| Q |
213 |
a--tcgtattaaattttataggatattttcaatatcttacctccttactaaactcgatcagatttaatctcatttagagttggctcaaaatatatgtact |
310 |
Q |
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| T |
7931759 |
aaatcgtattaaatttgataggattttttcaatatcttacctccttactaaactcgatcagatttaatctcatttagagttgccttaaaatatatgtact |
7931858 |
T |
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| Q |
311 |
ggatcgttgaatcattatcaaacaaattattgaatcattggttgaattatatcactcagatgaataatttagttgtacaaacacaacaaattgtattagt |
410 |
Q |
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| T |
7931859 |
ggatcgttgaatcattatcaaacaaattattgaatcattggttgaattgtatcacttagatgaataatttaattatacaaacacaacaaattgtattagt |
7931958 |
T |
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| Q |
411 |
tgtgtatatgttaatttggattnnnnnnnncgacaatataaaggagtcgaga----gagtaatactcttcaaattaattttatgaaaaaattgcgttgac |
506 |
Q |
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| T |
7931959 |
tgtgtatatattaatttggat--aaaaaaacgacaatataaaggagtcgagagagtgagtaatactcttcaaattaattttatgaaaaaattgcgttgac |
7932056 |
T |
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| Q |
507 |
attttacctaagattccttctagttttcaaaatgcactcaccacctctctta |
558 |
Q |
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| T |
7932057 |
attttacctaaaattccttctagttttcaaaatgcactcaccgcctctctta |
7932108 |
T |
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