View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8635_low_2 (Length: 301)

Name: NF8635_low_2
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8635_low_2
NF8635_low_2
[»] chr8 (1 HSPs)
chr8 (1-301)||(39349709-39350009)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 39350009 - 39349709
Alignment:
Q  1 aacgtcttgatagacgaggtttcgaggttgaatcggagtatcgagttcatcgtcaatggatttggaagagggtttaggaggagcagagagatcttgaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39350009 aacgtcttgatagacgaggtttcgaggttgaatcggagtatcgagttcatcgtcaatggatttggaagagggtttaggaggagcagagagatcttgaaga 39349910  T
Q  101 aagcgatagtgactatcgttgaggctttggggttttttgacgctcttattcgccgccattgaagaacgttgtgttttgtttgaaaatgaaatgaaatggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39349909 aagcgatagtgactatcgttgaggctttggggttttttgacgctcttattcgccgccattgaagaacgttgtgttttgtttgaaaatgaaatgaaatgag 39349810  T
Q  201 gatttctcaacgtatatattactattacgagtgtttagattcccgctttgttcgctaatttgaattttgcaatcaaaatgatgactcaaatcggcgcatg 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39349809 gatttctcaacgtatatattactattacgagtgcttagattcccgctttgttcgctaatttgaattttgcaatcaaaatgacgactcaaatcggcgcatg 39349710  T
Q  301 t 301  Q
    |    
T  39349709 t 39349709  T

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