View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8635_low_3 (Length: 261)

Name: NF8635_low_3
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8635_low_3
NF8635_low_3
[»] chr8 (4 HSPs)
chr8 (1-247)||(15249611-15249854)
chr8 (63-97)||(7172992-7173026)
chr8 (14-59)||(33757873-33757919)
chr8 (63-95)||(39329375-39329407)
[»] chr4 (6 HSPs)
chr4 (1-59)||(17947315-17947374)
chr4 (2-61)||(2478933-2478993)
chr4 (1-54)||(3460866-3460920)
chr4 (1-57)||(11692153-11692210)
chr4 (63-92)||(49747039-49747068)
chr4 (2-57)||(40154667-40154723)
[»] chr1 (4 HSPs)
chr1 (1-59)||(33261691-33261749)
chr1 (1-59)||(33281850-33281908)
chr1 (63-119)||(6267843-6267896)
chr1 (1-64)||(14397985-14398049)
[»] chr3 (4 HSPs)
chr3 (1-57)||(1741971-1742028)
chr3 (1-59)||(16024833-16024892)
chr3 (1-59)||(31989804-31989863)
chr3 (63-119)||(14194633-14194686)
[»] chr7 (3 HSPs)
chr7 (1-59)||(33005162-33005221)
chr7 (3-65)||(25245006-25245069)
chr7 (66-102)||(34947588-34947624)
[»] chr5 (3 HSPs)
chr5 (1-57)||(7630646-7630703)
chr5 (1-59)||(38445995-38446054)
chr5 (1-59)||(40972148-40972207)
[»] chr2 (9 HSPs)
chr2 (63-137)||(39691568-39691639)
chr2 (3-59)||(43281884-43281940)
chr2 (1-59)||(12926507-12926566)
chr2 (1-59)||(35652116-35652175)
chr2 (63-93)||(18853205-18853235)
chr2 (63-97)||(43115803-43115837)
chr2 (63-92)||(15435449-15435478)
chr2 (66-137)||(26607932-26608000)
chr2 (1-64)||(35665322-35665386)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 15249611 - 15249854
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatatatt-atagggatgaaaagcttatttaaccttatatcattgaaatcaacacaattaattatttctttatt 99  Q
    |||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15249611 ttttttagtgacgaaaatcaaaatttgatatgtttatagggatgaaaagcttatttaaccttatatcattgaaatcaacacaattaattatttctttatt 15249710  T
Q  100 aaaaatggtgcacaaaccttcaaccattatattttagatgtaactatattttttaaattgttttgtttaaatatcactgaatacgtttgacatgctcaaa 199  Q
    |||||| ||||||||||||| ||  ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  15249711 aaaaatcgtgcacaaaccttaaatgattatattttagaagtaactatatttttttaattgttttgtttaaatttcactgaatacgtttgacatgctcaaa 15249810  T
Q  200 accaccactgcttaaccatccatgacatgtataaacacagtaaatcct 247  Q
    ||||||  ||||||||||     | ||| |||||||||||||||||||    
T  15249811 accacccttgcttaaccac----ggcatatataaacacagtaaatcct 15249854  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 7172992 - 7173026
Alignment:
Q  63 tatcattgaaatcaacacaattaattatttcttta 97  Q
    ||||||||||||||||||||||||| |||||||||    
T  7172992 tatcattgaaatcaacacaattaatcatttcttta 7173026  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 33757919 - 33757873
Alignment:
Q  14 aaaatcaaaatttgatatatt-atagggatgaaaagcttatttaacc 59  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  33757919 aaaatcaaaatttaatatatttatagggatgaaaaacttatttaacc 33757873  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 39329375 - 39329407
Alignment:
Q  63 tatcattgaaatcaacacaattaattatttctt 95  Q
    ||||||||||||||||||||||||| |||||||    
T  39329375 tatcattgaaatcaacacaattaatcatttctt 39329407  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17947315 - 17947374
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaacc 59  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||  ||||||||||    
T  17947315 ttttttagggactaaaatcaaaatttgatatatttatagggatgaaaaatttatttaacc 17947374  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 2478993 - 2478933
Alignment:
Q  2 tttttagggacgaaaatcaaaatttgatatatt-atagggatgaaaagcttatttaacctt 61  Q
    ||||||||||| ||||||||||||  ||||||| ||||||| ||||| |||||||||||||    
T  2478993 tttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacctt 2478933  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3460920 - 3460866
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatt 54  Q
    ||||||||||| |||||||||||||||||||| |||||  |||||||| ||||||    
T  3460920 ttttttagggatgaaaatcaaaatttgatatatttataatgatgaaaaacttatt 3460866  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11692210 - 11692153
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatatatt-atagggatgaaaagcttatttaa 57  Q
    |||||||| ||| |||||||||||| | |||||| ||||||||||||| |||||||||    
T  11692210 ttttttagagactaaaatcaaaattcgctatatttatagggatgaaaaacttatttaa 11692153  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 49747039 - 49747068
Alignment:
Q  63 tatcattgaaatcaacacaattaattattt 92  Q
    ||||||||||||||||||||||||||||||    
T  49747039 tatcattgaaatcaacacaattaattattt 49747068  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 40154667 - 40154723
Alignment:
Q  2 tttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaa 57  Q
    ||||||| ||| ||||||||| ||||||||| ||||||||| ||||| |||||||||    
T  40154667 tttttagagactaaaatcaaattttgatatatttatagggacgaaaaacttatttaa 40154723  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33261749 - 33261691
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatatattatagggatgaaaagcttatttaacc 59  Q
    |||||||||||| |||||||||||||||||| ||||| ||| ||||| |||||||||||    
T  33261749 ttttttagggactaaaatcaaaatttgatattttataaggacgaaaaacttatttaacc 33261691  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33281908 - 33281850
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatatattatagggatgaaaagcttatttaacc 59  Q
    |||||||||||| |||||||||||||||||| ||||| ||| ||||| |||||||||||    
T  33281908 ttttttagggactaaaatcaaaatttgatattttataaggacgaaaaacttatttaacc 33281850  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 6267896 - 6267843
Alignment:
Q  63 tatcattgaaatcaacacaattaattatttctttattaaaaatggtgcacaaacctt 119  Q
    ||||||| ||||||||||||||||| ||||||   |||||||| |||||||||||||    
T  6267896 tatcattaaaatcaacacaattaatcatttct---ttaaaaatagtgcacaaacctt 6267843  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14398049 - 14397985
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatatatt-atagggatgaaaagcttatttaaccttata 64  Q
    ||||||||| || |||||||||||| | |||||| ||| ||||||||| ||||||||||| ||||    
T  14398049 ttttttaggaactaaaatcaaaattagttatatttatatggatgaaaaacttatttaaccctata 14397985  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 1742028 - 1741971
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaa 57  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||| |||||||||    
T  1742028 ttttttagggattaaaatcaaaatttgatatatttatagggatgaaaatcttatttaa 1741971  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16024833 - 16024892
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaacc 59  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||| | |||||||||||    
T  16024833 ttttttagggactaaaatcaaaatttgatatatttatagggacgaataacttatttaacc 16024892  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31989863 - 31989804
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaacc 59  Q
    |||||||||||| ||||| ||||||||||||| ||||| ||| ||||| |||||||||||    
T  31989863 ttttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaacc 31989804  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 14194633 - 14194686
Alignment:
Q  63 tatcattgaaatcaacacaattaattatttctttattaaaaatggtgcacaaacctt 119  Q
    |||||||||||||||||||||| || ||||||   |||||||| |||||||||||||    
T  14194633 tatcattgaaatcaacacaattgatcatttct---ttaaaaatcgtgcacaaacctt 14194686  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33005162 - 33005221
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaacc 59  Q
    ||||||||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||    
T  33005162 ttttttagggacgaaaagcaaaatttaatatatttatagggacgaaaaacttatttaacc 33005221  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 25245069 - 25245006
Alignment:
Q  3 ttttagggacgaaaatcaaaatttgatatatt-atagggatgaaaagcttatttaaccttatat 65  Q
    |||||||||  |||||||||||| | ||| || ||||||||||||| |||||||||||||||||    
T  25245069 ttttagggatcaaaatcaaaattcgctatttttatagggatgaaaaacttatttaaccttatat 25245006  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 34947588 - 34947624
Alignment:
Q  66 cattgaaatcaacacaattaattatttctttattaaa 102  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  34947588 cattgaaatcaacacaattaatcatttctttaataaa 34947624  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7630646 - 7630703
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaa 57  Q
    |||||||||||| ||||||||||||||||||| |||||| || ||||| |||||||||    
T  7630646 ttttttagggactaaaatcaaaatttgatatatttatagagacgaaaaacttatttaa 7630703  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38445995 - 38446054
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatatatt-atagggatgaaaagcttatttaacc 59  Q
    |||||||||||| |||||||||||| | | |||| ||||||||||||| |||||||||||    
T  38445995 ttttttagggactaaaatcaaaattcgctgtatttatagggatgaaaaacttatttaacc 38446054  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40972148 - 40972207
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaacc 59  Q
    |||||||||||| |||||||||||| | |||| |||||||||||||||  ||||||||||    
T  40972148 ttttttagggactaaaatcaaaattcgttatatttatagggatgaaaaaattatttaacc 40972207  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 39691568 - 39691639
Alignment:
Q  63 tatcattgaaatcaacacaattaattatttctttattaaaaatggtgcacaaaccttcaaccattatattttaga 137  Q
    ||||||||||||||||||||||||| ||   ||| |||| ||| ||||||||||||| ||| |||||| ||||||    
T  39691568 tatcattgaaatcaacacaattaatcat---tttcttaataatcgtgcacaaaccttaaacgattataatttaga 39691639  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 43281884 - 43281940
Alignment:
Q  3 ttttagggacgaaaatcaaaatttgatatattatagggatgaaaagcttatttaacc 59  Q
    ||||||| || |||||||||||||| ||||||||  ||||||||| |||||||||||    
T  43281884 ttttaggaactaaaatcaaaatttgttatattattaggatgaaaaacttatttaacc 43281940  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12926566 - 12926507
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaacc 59  Q
    ||||| |||||||||||||||||||  ||||| |||||| |||||||| |||||||||||    
T  12926566 tttttcagggacgaaaatcaaaattcaatatatttatagtgatgaaaaacttatttaacc 12926507  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35652116 - 35652175
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatatatt-atagggatgaaaagcttatttaacc 59  Q
    ||||||||  || ||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  35652116 ttttttagaaactaaaattaaaatttgatatatttatagggatgaaaaacttatttaacc 35652175  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 93
Target Start/End: Complemental strand, 18853235 - 18853205
Alignment:
Q  63 tatcattgaaatcaacacaattaattatttc 93  Q
    |||||||||||||||||||||||||||||||    
T  18853235 tatcattgaaatcaacacaattaattatttc 18853205  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 43115837 - 43115803
Alignment:
Q  63 tatcattgaaatcaacacaattaattatttcttta 97  Q
    ||||||||||||||||||||||||| |||||||||    
T  43115837 tatcattgaaatcaacacaattaatcatttcttta 43115803  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 15435449 - 15435478
Alignment:
Q  63 tatcattgaaatcaacacaattaattattt 92  Q
    ||||||||||||||||||||||||||||||    
T  15435449 tatcattgaaatcaacacaattaattattt 15435478  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 26608000 - 26607932
Alignment:
Q  66 cattgaaatcaacacaattaattatttctttattaaaaatggtgcacaaaccttcaaccattatattttaga 137  Q
    |||||||||||||||||||||| ||   ||| |||| ||| ||||||||||||| ||| |||||| ||||||    
T  26608000 cattgaaatcaacacaattaatcat---tttcttaataatcgtgcacaaaccttaaactattataatttaga 26607932  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 35665386 - 35665322
Alignment:
Q  1 ttttttagggacgaaaatcaaaatttgatata-ttatagggatgaaaagcttatttaaccttata 64  Q
    |||||||||||| |||||||||||| | |||| ||||| ||| ||||| ||||||||||| ||||    
T  35665386 ttttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccctata 35665322  T

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