View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8635_low_4 (Length: 251)

Name: NF8635_low_4
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8635_low_4
NF8635_low_4
[»] chr8 (6 HSPs)
chr8 (1-242)||(15249320-15249563)
chr8 (1-76)||(158870-158944)
chr8 (1-77)||(23757479-23757557)
chr8 (1-63)||(33758035-33758097)
chr8 (1-77)||(13515457-13515533)
chr8 (1-77)||(13604990-13605066)
[»] chr7 (5 HSPs)
chr7 (1-67)||(30218941-30219007)
chr7 (1-102)||(25245325-25245426)
chr7 (1-77)||(33004953-33005029)
chr7 (1-47)||(39187545-39187591)
chr7 (16-76)||(33998695-33998755)
[»] chr5 (5 HSPs)
chr5 (1-77)||(15304446-15304522)
chr5 (7-102)||(21034778-21034873)
chr5 (1-67)||(38445881-38445947)
chr5 (12-77)||(18257949-18258014)
chr5 (1-57)||(26032355-26032411)
[»] chr4 (7 HSPs)
chr4 (5-77)||(4120034-4120106)
chr4 (1-102)||(31792734-31792835)
chr4 (1-102)||(41609195-41609296)
chr4 (16-67)||(52132028-52132079)
chr4 (1-50)||(51203327-51203376)
chr4 (1-67)||(11692251-11692317)
chr4 (16-102)||(5521378-5521464)
[»] chr2 (13 HSPs)
chr2 (1-77)||(7876267-7876343)
chr2 (2-77)||(12496764-12496839)
chr2 (17-76)||(27002774-27002833)
chr2 (6-77)||(28191559-28191630)
chr2 (2-77)||(30956143-30956218)
chr2 (1-62)||(35665434-35665495)
chr2 (5-77)||(578375-578447)
chr2 (1-77)||(1944075-1944151)
chr2 (1-68)||(25954545-25954611)
chr2 (16-77)||(654142-654204)
chr2 (2-59)||(42479981-42480038)
chr2 (1-37)||(7693674-7693710)
chr2 (5-77)||(24895637-24895709)
[»] chr1 (8 HSPs)
chr1 (1-77)||(33261880-33261956)
chr1 (1-77)||(33282039-33282115)
chr1 (1-67)||(1691455-1691521)
chr1 (1-67)||(14398096-14398162)
chr1 (4-45)||(18354827-18354868)
chr1 (2-67)||(27086162-27086227)
chr1 (1-50)||(49457910-49457959)
chr1 (1-77)||(10840333-10840409)
[»] chr6 (4 HSPs)
chr6 (17-77)||(34707678-34707738)
chr6 (30-77)||(1111869-1111916)
chr6 (1-76)||(3014382-3014457)
chr6 (16-102)||(26386311-26386397)
[»] chr3 (1 HSPs)
chr3 (5-67)||(54394419-54394481)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15249563 - 15249320
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatgnnnnnnn-attatgttcaacatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||        |||||||||||||||    
T  15249563 gtccttaatgaccattttatgttcatgtaaatgtcaaaattacaactcttctatgttaaaattgcattcatgttatgttttttttattatgttcaacatt 15249464  T
Q  100 tattaattgtagataattaaaaatgaaaataggactaacccgtgcatattttgatagataaataaatgacctaaatgggac-nnnnnnnnngataaaaga 198  Q
    |||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||          ||||||  |    
T  15249463 tattaattgtggataattaaaaatgaaaataggactaactagtgcatattttgatagataaataaatgacctaaatgggacaaaaaaaaaagataaagaa 15249364  T
Q  199 ccattgcgttataactaaataagataaattacctctagtataat 242  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  15249363 ccattgcgttataactaaataagataaattacctctagtgtaat 15249320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 158944 - 158870
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttat 76  Q
    |||||||| ||||| |||||||| |||| ||| |||| |||||||||||| |||||| |||||||| |||||||||    
T  158944 gtccttaaagaccactttatgttaatgtgaatttcaagattataactcttttatgtttaaattgta-tcatgttat 158870  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23757557 - 23757479
Alignment:
Q  1 gtccttaatgaccattttatgttca--tgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||||| |||||||||||| |  | ||||||||||||||||||||||| |||||||||  |||||  ||||||||    
T  23757557 gtccttaatggccattttatgtttagatataaatgtcaaaattataactcttttatgttcaagatgtatctatgttatg 23757479  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33758097 - 33758035
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaatt 63  Q
    |||||||||| ||| ||||||||||||| |||||||| |||||||||||  ||| ||||||||    
T  33758097 gtccttaatggccactttatgttcatgtgaatgtcaagattataactctattatattcaaatt 33758035  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13515457 - 13515533
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||||  ||| ||||||||||| | ||||||||  ||||||||||  ||| |||||||||||| || ||||||    
T  13515457 gtccttaatagccactttatgttcatatgaatgtcaagtttataactctattatattcaaattgtatccaagttatg 13515533  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13604990 - 13605066
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||||  ||| ||||||||||| | ||||||||  ||||||||||  ||| |||||||||||| || ||||||    
T  13604990 gtccttaatagccactttatgttcatatgaatgtcaagtttataactctattatattcaaattgtatccaagttatg 13605066  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30219007 - 30218941
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtat 67  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  30219007 gtccttaatggccattttattttcatataaatgtcaaaattataactcttttatgttcaaattgtat 30218941  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 25245426 - 25245325
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatgnnnnnnnattatgttcaacattt 100  Q
    |||||||||| ||  ||||||||||| |||||||||| |||||||||||| |||| ||||  |||||||||||||||       ||||||||||||||||    
T  25245426 gtccttaatggcctatttatgttcatataaatgtcaagattataactcttttatgatcaagatgtattcatgttatgttcgtttattatgttcaacattt 25245327  T
Q  101 at 102  Q
    ||    
T  25245326 at 25245325  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33004953 - 33005029
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||||| ||| ||||| ||||||| |||||||||||| ||||| || |||||||||||||||| || ||||||    
T  33004953 gtccttaatggccactttattttcatgtgaatgtcaaaattgtaactattttatgttcaaattgtatccaagttatg 33005029  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39187545 - 39187591
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataact 47  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  39187545 gtccttaatgaccaatttatgttcatataaatgtcaaaattataact 39187591  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 33998695 - 33998755
Alignment:
Q  16 tttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttat 76  Q
    ||||||||||| | |||||||| ||||||||| || ||||||||||||||||  |||||||    
T  33998695 tttatgttcatatgaatgtcaagattataacttttttatgttcaaattgtatctatgttat 33998755  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15304446 - 15304522
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||||| ||| ||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||| |||||    
T  15304446 gtccttaatggccactttatgttcatgtgaatatcaagattataactcttatatgttcaaattgtattcatattatg 15304522  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 21034873 - 21034778
Alignment:
Q  7 aatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatgnnnnnnnattatgttcaacatttat 102  Q
    |||| ||| ||||||||||||| |||||||| |||||||||||| |||||| |||||||||||| |||||        ||||||||||||||||||    
T  21034873 aatggccactttatgttcatgtgaatgtcaagattataactcttttatgtttaaattgtattcaagttatatccgtttattatgttcaacatttat 21034778  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 38445947 - 38445881
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtat 67  Q
    |||||||||| ||| ||||||||||||| |||||||| ||||||| |||| ||||||||||||||||    
T  38445947 gtccttaatggccactttatgttcatgtgaatgtcaagattataaatcttttatgttcaaattgtat 38445881  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 18258014 - 18257949
Alignment:
Q  12 ccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    ||||||||||||||||| |||||||| ||||||||  || |||||||||||||||| ||| |||||    
T  18258014 ccattttatgttcatgtgaatgtcaagattataaccattttatgttcaaattgtatccatattatg 18257949  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 26032355 - 26032411
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgtt 57  Q
    |||||| ||||||| ||||||||||||| |||||||| |||||||||||| ||||||    
T  26032355 gtccttgatgaccactttatgttcatgtgaatgtcaagattataactcttttatgtt 26032411  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 4120106 - 4120034
Alignment:
Q  5 ttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||| ||| |||||||||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||||    
T  4120106 ttaatggccactttatgttcatgtaaatgtcaagattataacttttccatgttcaaattgtatttatgttatg 4120034  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31792835 - 31792734
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatgnnnnnnnattatgttcaacattt 100  Q
    |||||||||||||| |||||||| |||| |||||||| |||||||||||| |||||||||||| ||| | |||| ||       ||||||||||||||||    
T  31792835 gtccttaatgaccagtttatgtttatgtgaatgtcaagattataactcttttatgttcaaattatatccttgttgtgtccgtttattatgttcaacattt 31792736  T
Q  101 at 102  Q
    ||    
T  31792735 at 31792734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 41609296 - 41609195
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatgnnnnnnnattatgttcaacattt 100  Q
    |||||||||| | | ||||||||||| |||||||||| |||||||||||| |||| ||||  ||||| |||||||||       ||||||||||||||||    
T  41609296 gtccttaatggctaatttatgttcatataaatgtcaagattataactcttttatgatcaagatgtatccatgttatgtccgtttattatgttcaacattt 41609197  T
Q  101 at 102  Q
    ||    
T  41609196 at 41609195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 52132028 - 52132079
Alignment:
Q  16 tttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtat 67  Q
    ||||||||||||| |||||||||||||||||| || ||||||||||||||||    
T  52132028 tttatgttcatgtgaatgtcaaaattataacttttttatgttcaaattgtat 52132079  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 51203327 - 51203376
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactctt 50  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||    
T  51203327 gtccttaatgaccaatttatgtttatataaatgtcaaaattataactctt 51203376  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11692251 - 11692317
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtat 67  Q
    ||||||||||||||  |||||||||||| | |||||| ||| |||| ||| ||||||||||||||||    
T  11692251 gtccttaatgaccacattatgttcatgtgagtgtcaagattgtaacacttttatgttcaaattgtat 11692317  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 5521464 - 5521378
Alignment:
Q  16 tttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatgnnnnnnnattatgttcaacatttat 102  Q
    ||||||||||| |||||| ||| |||||||||||| |||| ||||  ||||| ||||||||        ||||||||||||||||||    
T  5521464 tttatgttcatataaatgccaagattataactcttttatggtcaagatgtatccatgttatatctatttattatgttcaacatttat 5521378  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7876267 - 7876343
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    ||||| |||||||| |||||||| || |||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  7876267 gtcctaaatgaccactttatgttaatataaatgtcaatattataactcttttatgttcaaattatattcatgttatg 7876343  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 12496839 - 12496764
Alignment:
Q  2 tccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||||  || ||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||| |||||    
T  12496839 tccttaatgggcactttatgttcatgtgaatgtcaagattataacacttttatgttcaaattgtattcatattatg 12496764  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 27002774 - 27002833
Alignment:
Q  17 ttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttat 76  Q
    |||| ||||| | |||||||||||||||| |||| |||||||||||||||||||||||||    
T  27002774 ttatattcatatgaatgtcaaaattataattcttttatgttcaaattgtattcatgttat 27002833  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 28191559 - 28191630
Alignment:
Q  6 taatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    ||||||||  ||||||||||| | |||||||||||||||| | || |||||||||||||||| |||||||||    
T  28191559 taatgacccctttatgttcatatgaatgtcaaaattataattattttatgttcaaattgtatacatgttatg 28191630  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 30956143 - 30956218
Alignment:
Q  2 tccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    ||||||||  ||| |||| |||||| |||||||||| |||||||||||| |||| ||||  |||||||||||||||    
T  30956143 tccttaattgccaatttaggttcatataaatgtcaagattataactcttttatggtcaagatgtattcatgttatg 30956218  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35665434 - 35665495
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaat 62  Q
    |||||||||||||| ||||||||  ||| |||||||| |||||||| ||| |||||||||||    
T  35665434 gtccttaatgaccactttatgttattgtgaatgtcaagattataacacttttatgttcaaat 35665495  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 578447 - 578375
Alignment:
Q  5 ttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||||| ||||||||||| | ||| |||| |||||||||||| |||| |||   |||||||||||||||    
T  578447 ttaatgaccaatttatgttcatatgaatatcaagattataactcttttatgatcaggatgtattcatgttatg 578375  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1944151 - 1944075
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||| ||||| ||| |||||||| || | |||||||||||||| | |||| |||||||||| ||| |||||||||||    
T  1944151 gtccctaatggccaatttatgttaatatgaatgtcaaaattatgagtcttttatgttcaaaatgtgttcatgttatg 1944075  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 25954545 - 25954611
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtatt 68  Q
    |||||||||||| ||||||| ||||||| ||||| || ||||||||| || |||||| ||||||||||    
T  25954545 gtccttaatgacaattttattttcatgtgaatgttaagattataact-ttttatgtttaaattgtatt 25954611  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 654204 - 654142
Alignment:
Q  16 tttatgttcatgtaaatgtcaaaattataactc-ttctatgttcaaattgtattcatgttatg 77  Q
    ||||||||||||| |||||||| |||||||| | || |||||||||||||||| ||| |||||    
T  654204 tttatgttcatgtgaatgtcaagattataacactttttatgttcaaattgtatccatattatg 654142  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 42479981 - 42480038
Alignment:
Q  2 tccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttca 59  Q
    |||||||||| || ||||||||||| | |||||||| ||||||||| || ||||||||    
T  42479981 tccttaatgaacaatttatgttcatattaatgtcaacattataactattttatgttca 42480038  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7693674 - 7693710
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaa 37  Q
    |||||||||||||  ||||||||||||||||||||||    
T  7693674 gtccttaatgaccgctttatgttcatgtaaatgtcaa 7693710  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 24895709 - 24895637
Alignment:
Q  5 ttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||| ||| ||||| ||||| |||||||||| |||||||||||| |||| ||||  ||||| ||| |||||    
T  24895709 ttaatggccaatttatattcatataaatgtcaagattataactcttttatgatcaagatgtatccatattatg 24895637  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33261956 - 33261880
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||| || |||||||||||||||| ||| |||||    
T  33261956 gtccttaatgaccactttatgttcatgtgaatgtaaaaattataacttttttatgttcaaattgtatccatattatg 33261880  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33282115 - 33282039
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||| || |||||||||||||||| ||| |||||    
T  33282115 gtccttaatgaccactttatgttcatgtgaatgtaaaaattataacttttttatgttcaaattgtatccatattatg 33282039  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1691521 - 1691455
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtat 67  Q
    |||||||||||||| ||||||||||||| ||||| |||||| |||| ||| | ||||||||||||||    
T  1691521 gtccttaatgaccactttatgttcatgtgaatgtaaaaattctaacacttttgtgttcaaattgtat 1691455  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 14398096 - 14398162
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtat 67  Q
    ||||||||| |||| ||||||||||| | |||||| | ||||||| |||| ||||||||||||||||    
T  14398096 gtccttaataaccactttatgttcatatgaatgtcgagattataattcttttatgttcaaattgtat 14398162  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 18354827 - 18354868
Alignment:
Q  4 cttaatgaccattttatgttcatgtaaatgtcaaaattataa 45  Q
    |||||||||||||||||||| |||| |||||||| |||||||    
T  18354827 cttaatgaccattttatgttgatgtgaatgtcaagattataa 18354868  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 27086227 - 27086162
Alignment:
Q  2 tccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtat 67  Q
    ||||||||||||| ||||| || | || |||||||| ||||||||  || ||||||||||||||||    
T  27086227 tccttaatgaccactttatttttacgtgaatgtcaagattataacatttttatgttcaaattgtat 27086162  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49457959 - 49457910
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactctt 50  Q
    ||||||| |||||| |||||||| |||| |||||||| ||||||||||||    
T  49457959 gtccttattgaccactttatgttgatgtgaatgtcaagattataactctt 49457910  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10840333 - 10840409
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||| |||| |||| ||||||||||| | |||||||| ||||| | |||| |||||| ||| ||| |||||||||||    
T  10840333 gtccctaataaccaatttatgttcatattaatgtcaagattatgattcttttatgtttaaaatgtgttcatgttatg 10840409  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 34707678 - 34707738
Alignment:
Q  17 ttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||| ||||| | |||||||||||||||| |||| ||||||||||||||||||||||||||    
T  34707678 ttatattcatatgaatgtcaaaattataattcttttatgttcaaattgtattcatgttatg 34707738  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 1111869 - 1111916
Alignment:
Q  30 aatgtcaaaattataactcttctatgttcaaattgtattcatgttatg 77  Q
    |||||||| |||||||||||| |||||||||||| ||| |||||||||    
T  1111869 aatgtcaagattataactcttttatgttcaaattatatccatgttatg 1111916  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3014382 - 3014457
Alignment:
Q  1 gtccttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttat 76  Q
    |||||||||| ||| ||||| ||||| ||||| |||| |||||||||||| |||| ||||  ||||| ||||||||    
T  3014382 gtccttaatggccaatttatattcatataaatatcaagattataactcttttatggtcaagatgtatccatgttat 3014457  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 26386311 - 26386397
Alignment:
Q  16 tttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtattcatgttatgnnnnnnnattatgttcaacatttat 102  Q
    ||||| || |||| ||||||||  ||||||||||| |||||| |||||||||||| |||||        ||||||||||||||||||    
T  26386311 tttatatttatgtgaatgtcaaggttataactcttttatgtttaaattgtattcaagttatatccgtttattatgttcaacatttat 26386397  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 54394419 - 54394481
Alignment:
Q  5 ttaatgaccattttatgttcatgtaaatgtcaaaattataactcttctatgttcaaattgtat 67  Q
    |||||||||| ||||||||||||| || ||||||||||||||| || |||| |||||| ||||    
T  54394419 ttaatgaccactttatgttcatgtgaacgtcaaaattataacttttttatgctcaaatagtat 54394481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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