View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8635_low_5 (Length: 249)
Name: NF8635_low_5
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8635_low_5 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold1079 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 16898988 - 16899230
Alignment:
| Q |
1 |
tatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898988 |
tatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattc |
16899087 |
T |
|
| Q |
101 |
gatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16899088 |
gatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatg |
16899187 |
T |
|
| Q |
201 |
attcctctggcattacggcctttaccacaatgatgatgtccat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
16899188 |
attcctctggcattacggcctttaccacaatgatgctgtccat |
16899230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 18347503 - 18347745
Alignment:
| Q |
1 |
tatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18347503 |
tatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattc |
18347602 |
T |
|
| Q |
101 |
gatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18347603 |
gatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatg |
18347702 |
T |
|
| Q |
201 |
attcctctggcattacggcctttaccacaatgatgatgtccat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
18347703 |
attcctctggcattacggcctttaccacaatgatgctgtccat |
18347745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 51701101 - 51701232
Alignment:
| Q |
67 |
gacaaatgtgtgcatttctattagggtcgtat----tcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtata |
162 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||| || |||||||||||||| ||||||| |||||||||||||||| ||||| |
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|
| T |
51701101 |
gacaaatgtgtgcatttcaattagggtcgtatatattcgttagttacgttttgaccatatatgtctatttcattcttacgaaaatcaattttacagtata |
51701200 |
T |
|
| Q |
163 |
gacgcttatgacct-ccccctctatgccctgc |
193 |
Q |
| |
|
||| ||||||| || ||||||||||||||||| |
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|
| T |
51701201 |
gacacttatgatctcccccctctatgccctgc |
51701232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 51701385 - 51701430
Alignment:
| Q |
187 |
gccctgcggtaatgattcctctggcattacggcctttaccacaatg |
232 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
51701385 |
gccctgcggtaaagattcctctggcattacggcctttaacacaatg |
51701430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13236988 - 13236746
Alignment:
| Q |
1 |
tatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13236988 |
tatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattc |
13236889 |
T |
|
| Q |
101 |
gatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13236888 |
gatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatg |
13236789 |
T |
|
| Q |
201 |
attcctctggcattacggcctttaccacaatgatgatgtccat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
13236788 |
attcctctggcattacggcctttaccacaatgatgctgtccat |
13236746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 198506 - 198277
Alignment:
| Q |
1 |
tatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
198506 |
tatctccaattatagcccctctgggatgtaaaatatatctcttctcaccatccccatagtgtatgagacaaatgtatgcatttcgattagggtcgtattc |
198407 |
T |
|
| Q |
101 |
gatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatg |
200 |
Q |
| |
|
|| |||||||||| |||| |||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
198406 |
tatggttacgattctaccagatatgtctttttgattccgtcgaaaatctattttacggtataggcgcttatgacctccccctctatgccatgcggtaatg |
198307 |
T |
|
| Q |
201 |
attcctctggcattacggcctttaccacaa |
230 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |
|
|
| T |
198306 |
attcctctggaattacgacctttaccacaa |
198277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 1 - 202
Alignment:
| Q |
42 |
ttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
1 |
ttctcaccatccccatagtgtatgagacaaatgtatgcatttcgattagggtcgtattctatggttacgattctaccatatatgtctttttcatttcgtc |
100 |
T |
|
| Q |
142 |
gaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtcc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
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|
| T |
101 |
gaaaatcaattttacggtatagacgcttatgacctccccctctatgccttgcggtaatgattcctctggcattacgacctttaccacaacgatgctgtcc |
200 |
T |
|
| Q |
242 |
at |
243 |
Q |
| |
|
|| |
|
|
| T |
201 |
at |
202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 33420468 - 33420594
Alignment:
| Q |
1 |
tatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
33420468 |
tatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagataaatgtgtgcatttctattagggtcgtattc |
33420567 |
T |
|
| Q |
101 |
gatagttacgattcgaccatatatgtc |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
33420568 |
gatagttacgattcgaccatatatgtc |
33420594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 110 - 243
Target Start/End: Complemental strand, 23053585 - 23053452
Alignment:
| Q |
110 |
gattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctg |
209 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
23053585 |
gattcgactatatatgtctttttcattccgtagaaaatcaattttacggtatagacgcttatgacctctccctctatgccctgtggtaacgattcctctg |
23053486 |
T |
|
| Q |
210 |
gcattacggcctttaccacaatgatgatgtccat |
243 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
23053485 |
gcattacagcctttaccacagtgatgctgtccat |
23053452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 26345889 - 26345819
Alignment:
| Q |
76 |
gtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaa |
146 |
Q |
| |
|
||||||||| |||||||| || ||| |||||||||||| | ||||||||||||||| ||| ||||||||| |
|
|
| T |
26345889 |
gtgcatttcgattagggttgttttcactagttacgattcaatcatatatgtcttttttattccgtcgaaaa |
26345819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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