View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8635_low_7 (Length: 206)

Name: NF8635_low_7
Description: NF8635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8635_low_7
NF8635_low_7
[»] chr4 (5 HSPs)
chr4 (11-140)||(48879400-48879529)
chr4 (137-188)||(48873696-48873747)
chr4 (137-188)||(48879000-48879051)
chr4 (13-100)||(48867028-48867115)
chr4 (102-134)||(48866696-48866728)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 48879529 - 48879400
Alignment:
Q  11 gagaagaagaaaaactacagttcatattcagtttgaatatccaacatactagcatactatattcacgtagacacaagatctcacacagatatgtaagcag 110  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48879529 gagaagaagaaaaattacagttcatattcagtttgaatatccaacatactagcatactatattcacttagacacaagatctcacacagatatgtaagcag 48879430  T
Q  111 tgttataccgagactcaaaggtgacttaag 140  Q
    ||||||||||||||||||||||||||||||    
T  48879429 tgttataccgagactcaaaggtgacttaag 48879400  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 48873747 - 48873696
Alignment:
Q  137 taagtccttgcagttaagcgcatgacaacatatttagaacacagtatataag 188  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48873747 taagtccttgcagttaagcgcatgacaacatatttagaacacggtatataag 48873696  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 48879051 - 48879000
Alignment:
Q  137 taagtccttgcagttaagcgcatgacaacatatttagaacacagtatataag 188  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48879051 taagtccttgcagttaagcgcatgacaacatatttagaacacggtatataag 48879000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 48867115 - 48867028
Alignment:
Q  13 gaagaagaaaaactacagttcatattcagtttgaatatccaacatactagcatactatattcacgtagacacaagatctcacacagat 100  Q
    ||||||||| ||||| |||  ||||||||||||||||||| |||||||| |||||||||||||| || |||||| ||||  |||||||    
T  48867115 gaagaagaataactagagtgtatattcagtttgaatatcctacatactaccatactatattcacttacacacaatatctgccacagat 48867028  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 48866728 - 48866696
Alignment:
Q  102 tgtaagcagtgttataccgagactcaaaggtga 134  Q
    |||||||||||||||||| ||||||||||||||    
T  48866728 tgtaagcagtgttatacctagactcaaaggtga 48866696  T

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