View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8636_high_3 (Length: 459)
Name: NF8636_high_3
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8636_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 2582346 - 2581913
Alignment:
| Q |
8 |
ttggtgttgtaattgcagctgtattaggagttgttaactcaaaaaatgatgatgataacaacaataatgcatctcaaaattcagtgactaattctatgaa |
107 |
Q |
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| T |
2582346 |
ttggtgttgtaattgcagctgtattaggagttgttaactcaaaaaatgatgatgataacaacaataatgcatctcaaaattcagtgactaattctatgaa |
2582247 |
T |
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| Q |
108 |
agctgtttgtgatgttacattgtacaaagattcatgttataacagtcttagttctattgttggctcaggaaaagaggttcaaccagaggagttgtttaag |
207 |
Q |
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| T |
2582246 |
agctgtttgtgatgttacattgtacaaagattcatgttataacagtcttagttctattgttggctcaggaaaagaggttcaacctgaggagttgtttaag |
2582147 |
T |
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| Q |
208 |
ttatcaatcaatgttgcattaactcatgtgtctaaagctattgagtatttcaatgaacatggtgttttcaaaaagttgatagaaaatagtagaaccaagg |
307 |
Q |
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| T |
2582146 |
ttatcaatcaatgtagcattaactcatgtgtctaaagctgttgagtatttcaatgaacatggtgttttcaaaaagttgatagaaaatagtagaaccaatg |
2582047 |
T |
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| Q |
308 |
aagctttgaaaaattgtagggttcttttggatcttgctattgatcatttgaataacacattgactgcttcaagggaaaattcttcacttcatcaagtttt |
407 |
Q |
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| T |
2582046 |
aagctttgaaaaattgtagggttcttttggatcttgctattgatcatttgaataacacattgactgcttcaagggaaaattcttcacttcatcaagtttt |
2581947 |
T |
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| Q |
408 |
tgatgatcttcaaacatggttaagtgctgcaggt |
441 |
Q |
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| T |
2581946 |
tgatgatcttcaaacatggttaagtgctgcaggt |
2581913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 16604465 - 16604529
Alignment:
| Q |
297 |
tagaaccaaggaagctttgaaaaattgtagggttcttttggatcttgctattgatcatttgaata |
361 |
Q |
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| T |
16604465 |
tagaacaaaggaagctttgatcaattgtaaggatcttttcggtcttgctgttgatgatttgaata |
16604529 |
T |
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