View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8636_high_6 (Length: 365)
Name: NF8636_high_6
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8636_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 357
Target Start/End: Complemental strand, 41864438 - 41864114
Alignment:
| Q |
30 |
acaggccaacaatcaccacatacattatattggactttgagttgcaaactccgatcttcaaactccaatttatttattatgcagtaaaattgctccttaa |
129 |
Q |
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| T |
41864438 |
acaggccaataatcatcacatacattatattggactttgagttgcaaactccgatcttcaatctccaatttatttattatgtagtacaatggctccttaa |
41864339 |
T |
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| Q |
130 |
ttgtagtactgcatcatacacacataaaacaaagtgttaggaatcaaattgagcacaatacatgagaaaataaacttgaacttcaaatttgtgcatcaat |
229 |
Q |
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||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41864338 |
ttgcagtagtgctgcatacacacataaaacaaagtgttaggaatcaaattgagcacaatacatgagaaaataaacttgaacttcaaatttgtgcatcaat |
41864239 |
T |
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| Q |
230 |
aataaaacttaacatnnnnnnnnnnnnngattatttggcctatagtaattttttgtcgctaagagtc--tatatatacttgccttcctgttgcaacaatt |
327 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| |||||| |
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| T |
41864238 |
aataaaacttaacataaaaaaaat-----attatttggcctatagtaattttttgtcgccaacagtctatatatatacttgccttcctgttgcgacaatt |
41864144 |
T |
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| Q |
328 |
ttcattgtcgctgtcactctcatctctgct |
357 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
41864143 |
ttcattgtcgctgtcactctcatcactgct |
41864114 |
T |
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