View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8636_high_7 (Length: 362)
Name: NF8636_high_7
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8636_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 46465144 - 46464812
Alignment:
| Q |
17 |
tagataattctattgcaatgtagataagataatcggtggttcttaatgatcctaagtttcctaagaaactaaaactctataagtttaagacnnnnnnnnn |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46465144 |
tagaaaattctattgcaatgtagataagataatcggtggttcttaatgatcctaagtttcctaagaaactaaaactctataagtttaagacttttttttt |
46465045 |
T |
|
| Q |
117 |
cttt-----ctccaactagatgttttctttcaaaatcatgttggttgggacactagttgctgatacaatacattagttgggacaatatgtagaatttacc |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46465044 |
ttttttttgctccaactagatgttttctttcaaaatcatgttggttgggacactagttgttgatacaatacattagttgggacaatatgtagaatttacc |
46464945 |
T |
|
| Q |
212 |
gaaccnnnnnnnncttcccaattaagatagcatgtcttacttctaagagttgattgtatgattccttcctcaacttgcactcttaaatcctaatgacttg |
311 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46464944 |
gaaccttttttt--ttcccaattaagatagcatgtcttacttctaagagttgattgtatgattccttcctcaacttgcactcttaaatcctaatgacttg |
46464847 |
T |
|
| Q |
312 |
aatattatcataaaaggagaatgtgtaatatgatt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
46464846 |
aatattatcataaaaggagaatgtgtaatatgatt |
46464812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University