View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8636_low_1 (Length: 496)
Name: NF8636_low_1
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8636_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 633485 - 633162
Alignment:
| Q |
15 |
agatcaaccaggagcatatatttccttcagtctattggacatacaagaataaaagaagcaaattctaaggactgatatctaattgtttaataaataaatg |
114 |
Q |
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| T |
633485 |
agatcaaccaggagcatatatttctttcattttattggacatacaagaataaaagaagcaaattctaaggactgatatctaattgttgaataaataaatg |
633386 |
T |
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| Q |
115 |
attgccgaaagcaccattccatccctatccttgcaacacacattgatatgaattgtttaactacgacttttcagtaaccttcaagctaaaacttaaccta |
214 |
Q |
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| T |
633385 |
attgccgaaagcaccattccatccctatccttgcaacacacattgatatgaattgtttaactacgacttttcattaaccttcaagctaaaacttaaccta |
633286 |
T |
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| Q |
215 |
acattaagaatgatgatgatacctatatttatctctctttttctcttaacaacaacttttagcttaagtctttattacatacacacgtttacacaaatcc |
314 |
Q |
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| T |
633285 |
acattaagaatgatgatgatacctatatttatctctctttttctcttaacaacaacttttagcttaagtctttattacatacacacgtttacacaaatc- |
633187 |
T |
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| Q |
315 |
tactacatactattagaaatatactta |
341 |
Q |
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| T |
633186 |
--ctacatactattagaaatatactta |
633162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 380 - 448
Target Start/End: Complemental strand, 633123 - 633055
Alignment:
| Q |
380 |
gaagacaatcaagtttattatgtttaatagtaactttttaaagcaaacaaaatttcgtatacattttat |
448 |
Q |
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| T |
633123 |
gaagacaatcaagcttattacgtttaatagtaactttttaaagcaaacaaaattccgtataaattttat |
633055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 632645 - 632607
Alignment:
| Q |
442 |
attttatacctatgtaacctaataattgaggtttactta |
480 |
Q |
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| T |
632645 |
attttatacctatgtaacctaataattgaggtttactta |
632607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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