View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8636_low_10 (Length: 302)
Name: NF8636_low_10
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8636_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 7932425 - 7932140
Alignment:
| Q |
18 |
gaaataggatcaacactaaagttagagagaattgtaatagccttttgttaagtctctttaaatgacattcacttccctgtagttttcaaaatgaactcac |
117 |
Q |
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| T |
7932425 |
gaaataggatcaacactaaagttagagagaattgtaatagccttctgttaagtctctttaaatgacattcacttccctgtagttttcaaaatgaactcac |
7932326 |
T |
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| Q |
118 |
ctactctatctatacttactaaaaacaattgcgcctatcattttgtttttgtcatacttacttttctagtcattcaccaaaaagacactagaatacacac |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7932325 |
ctactctatctatacttactaaaaacaattgcgccaatcattttgtttttgtcatgcttacttttctagtcattcaccaaaaagacactagaatacacac |
7932226 |
T |
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| Q |
218 |
ccattgtgccacta-------------------caaattgcatatataagatgtatgtgatcatacctctacaaattaaagtgaaa |
284 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7932225 |
ccattgtgccactaggaacattaccatacctttcaaattgcatatataagatgtatgtgatcatacctctacaaattaaagtgaaa |
7932140 |
T |
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