View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8636_low_11 (Length: 262)
Name: NF8636_low_11
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8636_low_11 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 30248645 - 30248884
Alignment:
| Q |
6 |
gtttggtggtgctgtgattaggacgatttggggtttttatgttattattggattattggtggaacctttgcgttcattttgatgatgtatcttgagatat |
105 |
Q |
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| T |
30248645 |
gtttagtggtgctgtgattaagacggtgtggggtttttatgttattattgttttattggtggaacctttgcgttcattttgatgatgtatcttgagatat |
30248744 |
T |
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| Q |
106 |
gattttgactctatgttgttgagattttatttttctccatcataccaagaaccaatgatacaaaatataaggaaactcacatctatgttgttcctcgttc |
205 |
Q |
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| T |
30248745 |
gatatttactctatgttgttgagattttatttttctccatcataccaagaaccaatgatacaaaatataaggaaactcgcatctatgttgttcctcgttc |
30248844 |
T |
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| Q |
206 |
tatttgtcagccagatcattatcatgaactgagataattt |
245 |
Q |
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| T |
30248845 |
tatttgtcagccagatcactatcatgaactgagataattt |
30248884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 17365487 - 17365614
Alignment:
| Q |
6 |
gtttggtggtgctgtgattaggacgatttggggtttttatgttattattggattattggtggaacctttgcgttcattttgatgatgtatcttgagatat |
105 |
Q |
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| T |
17365487 |
gtttagtggttctctgattaggatagtttggggtttttatgttattattggattgttgatggaacc-ttgtgttcattttgatgatgtatcttgagatat |
17365585 |
T |
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| Q |
106 |
gat-tttgactctatgttgttgagatttt |
133 |
Q |
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| T |
17365586 |
gatatttgaatctatgttgttgagttttt |
17365614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 10201 - 10319
Alignment:
| Q |
20 |
tgattaggacgatttggggtttttatgttattattggattattggtggaacctttgcgttcattttgatgatgtatcttgagatatgat-tttgactcta |
118 |
Q |
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|||||||||| |||| |||||||||||||||||| ||| ||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10201 |
tgattaggacagtttgaggtttttatgttattattatattgttgatggaacctt-gtgttcattttgatgatgtatcttgagatatgatatttgactcta |
10299 |
T |
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| Q |
119 |
tgttgttgagattttatttt |
138 |
Q |
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| T |
10300 |
tgttgtagagattttatttt |
10319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 16217510 - 16217638
Alignment:
| Q |
11 |
gtggtgctgtgattaggacgatttggggttttt-atgttattattggattattggtggaacctttgcgttcattttgatgatgtatcttgagatatgat- |
108 |
Q |
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| T |
16217510 |
gtggtgctctaattaggatagtttggggttttttatgttattatcgtattgttgatgga-cctttgtgttcattttgatgatgtatcttgtgatatgata |
16217608 |
T |
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| Q |
109 |
tttgactctatgttgttgagattttatttt |
138 |
Q |
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| T |
16217609 |
tttgactctatgtggttgagattttatttt |
16217638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 41374728 - 41374660
Alignment:
| Q |
71 |
ctttgcgttcattttgatgatgtatcttgagatatgat-tttgactctatgttgttgagattttatttt |
138 |
Q |
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| T |
41374728 |
ctttgagtttattttgatgatgcaccttgagatttgatatttgaccccatattgttgagattttatttt |
41374660 |
T |
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