View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8636_low_12 (Length: 250)
Name: NF8636_low_12
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8636_low_12 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 20683715 - 20683485
Alignment:
| Q |
15 |
tctcggtaagaaagctgacatagatggaagctaaagggtatgcaaaccttgaggaattttcttattaaggtaacataaataaacataaacaaattcataa |
114 |
Q |
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| T |
20683715 |
tctcgggaagaaagctgacatagatggaagctaaagggtatgcaaaccttgaggaattttcttattaa-------taaataaacataaacaaattcataa |
20683623 |
T |
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| Q |
115 |
tatgttcatatatgcatgnnnnnnnn--ttatatggagacaagtttaatatgataatatggagaaaatcacaatataatctacctttattaaaaggatat |
212 |
Q |
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| T |
20683622 |
tatgttcatatatgcatgaaaaaaaaaattatatggagacaagtttaataagataatatggagaaaatcacaatataatctacctttattaaaaggatat |
20683523 |
T |
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| Q |
213 |
ttcatgtctttgtccagataaaacttctgaatagtgac |
250 |
Q |
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| T |
20683522 |
tccatgtctttgtccaaataaaacttctgaatagtgac |
20683485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 20686913 - 20686996
Alignment:
| Q |
45 |
ctaaagggtatgcaaaccttgaggaattttcttattaaggtaacataaataaacataaacaaattcataatatgttcatatatg |
128 |
Q |
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| T |
20686913 |
ctaaagtgtatgcaaactttgaggaccttccttattcatgtaacatgaataaacataaacaagatcataatatgatcatatatg |
20686996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 20682052 - 20682012
Alignment:
| Q |
196 |
ctttattaaaaggatatttcatgtctttgtccagataaaac |
236 |
Q |
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| T |
20682052 |
ctttattaaaaggatatttcatgtctttatctagataaaac |
20682012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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