View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8636_low_13 (Length: 250)

Name: NF8636_low_13
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8636_low_13
NF8636_low_13
[»] chr4 (10 HSPs)
chr4 (1-239)||(53472520-53472757)
chr4 (48-218)||(53469652-53469823)
chr4 (90-221)||(27272572-27272705)
chr4 (48-187)||(32015122-32015262)
chr4 (79-232)||(10395953-10396107)
chr4 (76-227)||(50887389-50887540)
chr4 (48-134)||(29235206-29235291)
chr4 (48-133)||(9010892-9010977)
chr4 (95-227)||(21206356-21206491)
chr4 (50-218)||(13816904-13817073)
[»] chr2 (7 HSPs)
chr2 (48-218)||(8761171-8761343)
chr2 (48-179)||(37965518-37965651)
chr2 (48-169)||(10128460-10128582)
chr2 (101-239)||(25550091-25550230)
chr2 (173-239)||(37965257-37965323)
chr2 (48-90)||(15140727-15140769)
chr2 (60-137)||(15140779-15140856)
[»] chr3 (5 HSPs)
chr3 (48-239)||(30046377-30046570)
chr3 (76-227)||(25889611-25889763)
chr3 (48-164)||(31141363-31141480)
chr3 (78-115)||(25578999-25579036)
chr3 (93-204)||(37133784-37133896)
[»] chr7 (10 HSPs)
chr7 (79-222)||(7961767-7961911)
chr7 (76-227)||(11269944-11270096)
chr7 (60-136)||(1103129-1103205)
chr7 (60-232)||(1716614-1716787)
chr7 (140-222)||(36207996-36208078)
chr7 (48-110)||(1345068-1345129)
chr7 (49-98)||(1103078-1103127)
chr7 (174-218)||(11269802-11269846)
chr7 (158-212)||(11280342-11280396)
chr7 (192-232)||(1345214-1345254)
[»] chr1 (6 HSPs)
chr1 (79-207)||(22827037-22827166)
chr1 (79-207)||(22840959-22841088)
chr1 (48-219)||(24284782-24284954)
chr1 (138-218)||(20260944-20261024)
chr1 (48-187)||(24272707-24272846)
chr1 (123-207)||(22826642-22826727)
[»] chr6 (12 HSPs)
chr6 (48-218)||(14721668-14721838)
chr6 (89-239)||(16910075-16910225)
chr6 (79-207)||(13557985-13558114)
chr6 (79-220)||(2921839-2921981)
chr6 (78-222)||(27340600-27340743)
chr6 (78-222)||(27401340-27401483)
chr6 (103-227)||(13555994-13556119)
chr6 (76-218)||(11678827-11678966)
chr6 (82-207)||(2923168-2923295)
chr6 (100-206)||(11677133-11677240)
chr6 (59-184)||(22880002-22880128)
chr6 (59-184)||(22898117-22898243)
[»] chr5 (4 HSPs)
chr5 (76-211)||(19670657-19670793)
chr5 (76-204)||(32795543-32795672)
chr5 (95-189)||(26896586-26896681)
chr5 (76-152)||(32796359-32796436)
[»] chr8 (2 HSPs)
chr8 (61-185)||(33897182-33897307)
chr8 (126-207)||(42001905-42001987)
[»] scaffold0007 (1 HSPs)
scaffold0007 (48-105)||(260473-260530)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 53472757 - 53472520
Alignment:
Q  1 tacttaaattcgaatggtttcttccaagtctaatacactcccaagtattgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacg 100  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  53472757 tacttaaattcgaatggtttcttccaagttttatacactccaaagtattgaaatatgccttgaattagtgttgggaaaatgttccacatcggataatacg 53472658  T
Q  101 aagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctcta 200  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  53472657 aagaaatatgcaaagactt-gccatataaataaaagtttgtgtgttagtatttcatgcaccaatggttagtgggttttgctatagctagcgttacctcta 53472559  T
Q  201 ctattcagtatctgtaattatcgattatagtgaattctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53472558 ctattcagtatctgtaattatcgattatagtgaattctt 53472520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 53469823 - 53469652
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 146  Q
    |||||||||| ||| ||||| |||||| ||||||| | ||||| ||||||| ||||||||||||||||| || | ||||||||||||||| |||||| ||    
T  53469823 ttgaaatatgcctttaattaatgttgggaaaatgttctacatcagataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgtt 53469724  T
Q  147 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 218  Q
    |||||||| || | |||| |||| ||| ||||  |||||| |  ||||||| || |||||||||||||||||    
T  53469723 agtatttcttgaatcaatagttagtggattttactatagccaatgttacctatattattcagtatctgtaat 53469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 27272572 - 27272705
Alignment:
Q  90 cggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg-ttttgttatagct 187  Q
    ||||||||| |||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||| ||||||||| |||| |||| ||||| |||||||    
T  27272572 cggataatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttttgctatagct 27272671  T
Q  188 agcgttacctctactattcagtatctgtaattat 221  Q
    ||| |||| |||||||||||  || |||||||||    
T  27272672 agcattacttctactattcaaaatttgtaattat 27272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 32015122 - 32015262
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 146  Q
    |||||||||||||||||||||||||| ||||| ||| |||||   |||||| ||||| ||||||||||| || || | ||||||||| | ||||||| ||    
T  32015122 ttgaaatatgtcttgaattagtgttgtaaaaaagtctcacataaaataataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgtt 32015221  T
Q  147 agtatttcatgcaccaatggttaatgggttttgttatagct 187  Q
    |||||||| ||||||||| |||| ||||||||| |||||||    
T  32015222 agtatttcttgcaccaatagttagtgggttttgctatagct 32015262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 10395953 - 10396107
Alignment:
Q  79 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 177  Q
    ||||| |||||| || || | ||||||||||||||||| |  ||||||||||||||||  |||||| |||||||||| |||| |||| |||| ||||||     
T  10395953 atgtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggtta 10396052  T
Q  178 tgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtg 232  Q
    || ||||| | | ||| | ||||||||||||||||||| ||||||||||||||||    
T  10396053 tgctatagatggtgttccttctactattcagtatctgtgattatcgattatagtg 10396107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 50887540 - 50887389
Alignment:
Q  76 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 174  Q
    |||||||||| ||||| |||||| ||| ||||||||||||  || |||||||||||||| || |||||  || || || | | ||| ||| |||| ||||    
T  50887540 aaaatgtcccgcatcgaataatatgaa-aaatatgcaaaggcttggccatataaataaatgtcttgtgcgttggttttgcttacactaatagttagtggg 50887442  T
Q  175 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 227  Q
    ||||| |||||||||  |||||||||||||| ||||| |||||||||| ||||    
T  50887441 ttttgctatagctagtattacctctactatttagtatatgtaattatcaatta 50887389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 29235291 - 29235206
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaa 134  Q
    |||||||||  ||||||||| |||||| ||||| ||||||||||||| ||| ||| ||||||||||||| || ||||||||||||||    
T  29235291 ttgaaatattccttgaatta-tgttgggaaaatatcccacatcggattatatgaaaaaatatgcaaagacttggccatataaataaa 29235206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 9010977 - 9010892
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataa 133  Q
    |||||||||| || ||||||||||| | || |||||||||||||||| ||| |||||||||||| | || || |||||||||||||    
T  9010977 ttgaaatatgcctggaattagtgttaggaatatgtcccacatcggatgatatgaagaaatatgctatgacttggccatataaataa 9010892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 21206356 - 21206491
Alignment:
Q  95 aatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttca-tgcaccaatggttaatggg-ttttgttatagctagcg 191  Q
    ||||||||||||||| |||||  || | ||||||||||||||   ||||||||||||||| | | ||||||| |||| |||| ||||||||||| ||||     
T  21206356 aatacgaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtattttattacaccaatagttagtgggtttttgttatagttagca 21206455  T
Q  192 ttacctctactattcagtatctgtaattatcgatta 227  Q
    |||| |||| ||||||  || |||||||||| ||||    
T  21206456 ttacttctattattcaaaatttgtaattatcaatta 21206491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 13816904 - 13817073
Alignment:
Q  50 gaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaa-agtttgtgtattag 148  Q
    ||||||||  |||||||| |||||| |||| ||| ||||||| | |||| |||||||||||| |||| || | |||||||||||| |  || ||| |||     
T  13816904 gaaatatgcattgaattaatgttgggaaaaagtctcacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttat 13817003  T
Q  149 tatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 218  Q
    |||||| || || ||| |||| || ||||||  ||||||||  || || || ||||||||||| ||||||    
T  13817004 tatttcttgtacaaatagttagtgagttttgcgatagctagtattgccactgctattcagtatttgtaat 13817073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 8761343 - 8761171
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgc-catataaataaaagt-ttgtgtat 145  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||| | ||||  ||||||||||||||| |||||| |    
T  8761343 ttgaaatatgtcttgaatttgtgttgggaaaatgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgt 8761244  T
Q  146 tagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 218  Q
    ||||||||| ||||||||| |||| ||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  8761243 tagtatttcttgcaccaattgttagtggattttgttatagctagcattatctctactattcagtatctgtaat 8761171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 37965651 - 37965518
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag--tttgtgtat 145  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| || |  |||||||||||||  ||||||| |    
T  37965651 ttgaaatatgccttgaattagtgttgggaaaatgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgt 37965552  T
Q  146 tagtatttcatgcaccaatggttaatgggttttg 179  Q
    ||||||||| ||||||||| ||||||||||||||    
T  37965551 tagtatttcttgcaccaatagttaatgggttttg 37965518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 10128460 - 10128582
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 146  Q
    |||||||||||| |||||||||||||||||||| | |||||||||| |||| ||||||||||| ||||| || | ||||||||||||||| |||||| ||    
T  10128460 ttgaaatatgtcctgaattagtgttggaaaaatattccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgtt 10128559  T
Q  147 agtatttcatgcaccaatggtta 169  Q
    |||||||| ||||||||| ||||    
T  10128560 agtatttcttgcaccaatagtta 10128582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 25550091 - 25550230
Alignment:
Q  101 aagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctct 199  Q
    |||||||||| |||||||| ||||||||||||||||| |||||| | |||||||| || || ||| |||| ||| ||||  ||||||| | ||||||| |    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtgt-agtatttcttggactaatagttagtggattttcctatagctggagttaccttt 25550189  T
Q  200 actattcagtatctgtaattatcgattatagt-gaattctt 239  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  25550190 actattcagtatctgtaattatcgattatagtagaattctt 25550230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 37965323 - 37965257
Alignment:
Q  173 ggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattctt 239  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37965323 ggttttgctataggtaacgttacctctactattcagtatctgtaattatcgattatagtgaattctt 37965257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 15140727 - 15140769
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatc 90  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15140727 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatc 15140769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 15140779 - 15140856
Alignment:
Q  60 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt 137  Q
    ||||||||||||||| |  |||||||||||||| ||| | ||||||||||| |||||||| | |||||||||||||||    
T  15140779 ttgaattagtgttgggattatgtcccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaagt 15140856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 30046377 - 30046570
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaa--tatgcaaagattttgccatataaataaaag-tttgtgta 144  Q
    |||||||||| ||||||||| |||||| |||||||| || ||||||||||| ||| |||  |||||||||| ||  ||||||||||||||| |||||||     
T  30046377 ttgaaatatgccttgaattaatgttgggaaaatgtctcatatcggataatatgaaaaaaaatatgcaaagacttgaccatataaataaaagctttgtgtg 30046476  T
Q  145 ttagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattctt 239  Q
    |||||||||| || || ||| |||| | ||||||| ||||||||||||||||||||||||||| ||| || |||||||||||| | |||||||||    
T  30046477 ttagtatttcttgtac-aatagttagtcggttttgctatagctagcgttacctctactattcaatatatgcaattatcgattacattgaattctt 30046570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 25889611 - 25889763
Alignment:
Q  76 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 174  Q
    ||||||||||||||||||||| | |||||  ||||||||| ||| | ||||||||||||||| |||| | |||||||||| ||||||||| |||| ||||    
T  25889611 aaaatgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtggg 25889710  T
Q  175 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 227  Q
    ||||| ||||||||||  |||||||| |||| ||| | |||||||||| ||||    
T  25889711 ttttgctatagctagcagtacctctattatttagtctttgtaattatcaatta 25889763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 31141363 - 31141480
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 146  Q
    |||||||||  ||| || || |||| |||||| ||| |||||| || |||| |||||||||||||||||||| ||||||||||||||||| ||| || ||    
T  31141363 ttgaaatataacttaaaatattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgtt 31141462  T
Q  147 agtatttcatgcaccaat 164  Q
    |||||||| | |||||||    
T  31141463 agtatttcttacaccaat 31141480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 25579036 - 25578999
Alignment:
Q  78 aatgtcccacatcggataatacgaagaaatatgcaaag 115  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  25579036 aatgtctcacatcggataatatgaagaaatatgcaaag 25578999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 37133896 - 37133784
Alignment:
Q  93 ataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcg 191  Q
    |||||| ||| |||||| | ||||||| ||| ||| ||||||||| ||||||||||||||||| | || |||| |||| ||  ||||| |||| |||  |    
T  37133896 ataatatgaaaaaatatacgaagatttagccgtatgaataaaagtcttgtgtattagtatttcttacatcaatagttagtgaattttgctataactaatg 37133797  T
Q  192 ttacctctactat 204  Q
    ||| |||||||||    
T  37133796 ttaactctactat 37133784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 7961767 - 7961911
Alignment:
Q  79 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 177  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | ||||||||||||||  |||||| |||||||||| ||||||||| |||| |||||||    
T  7961767 atgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 7961866  T
Q  178 tgttatagctagcgttacctctactattcagtatctgtaattatc 222  Q
    || |||||||||| |||| |||||||||||  || ||||||||||    
T  7961867 tgctatagctagcattacttctactattcaaaatttgtaattatc 7961911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 11269944 - 11270096
Alignment:
Q  76 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 174  Q
    ||||||||||||||||||||||| ||||||||||  |||  ||| | ||||||||||||||  |||||| ||||||||   ||||||||| |||| ||||    
T  11269944 aaaatgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaatagttagtggg 11270043  T
Q  175 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 227  Q
    ||||| |||| |||| ||||||||||||||||||||| |||||||||| ||||    
T  11270044 ttttgctataactagtgttacctctactattcagtatttgtaattatcaatta 11270096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 1103129 - 1103205
Alignment:
Q  60 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag 136  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||    
T  1103129 ttgaattagtgttggaaaaacgtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaag 1103205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 1716787 - 1716614
Alignment:
Q  60 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgc 158  Q
    ||||| ||||||||||||||  || ||||||| | |||| ||| ||||||| ||||| ||  ||||||||||||| || |||||| ||| |||||| |||    
T  1716787 ttgaaatagtgttggaaaaaattctcacatcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgc 1716688  T
Q  159 accaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtg 232  Q
    | |||| |||| || ||||| |||||||| |  |||||||||||||||||||| | | || |||||||||||||    
T  1716687 atcaatagttagtgagtttttttatagctggtattacctctactattcagtatatatgataatcgattatagtg 1716614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 36207996 - 36208078
Alignment:
Q  140 gtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatc 222  Q
    |||| |||||||||| ||||||||| |||| ||||||||| |||||||||||||| |||||||||| ||||||| ||||||||    
T  36207996 gtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcgttagctctactatttagtatctctaattatc 36208078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 1345068 - 1345129
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatg 110  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||| | |||| |||||||||||    
T  1345068 ttgaaatatgtcttgaattagtgttagaaaaa-gtctcacatcgaagaataagaagaaatatg 1345129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 1103078 - 1103127
Alignment:
Q  49 tgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataata 98  Q
    ||||||||| |||||||||||||||| |||||||| |||||| |||||||    
T  1103078 tgaaatatgccttgaattagtgttgggaaaatgtctcacatctgataata 1103127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 11269846 - 11269802
Alignment:
Q  174 gttttgttatagctagcgttacctctactattcagtatctgtaat 218  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||    
T  11269846 gttttgctatagctagcgttacctctactagttagtatctgtaat 11269802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 11280342 - 11280396
Alignment:
Q  158 caccaatggttaatgggttttgttatagctagcgttacctctactattcagtatc 212  Q
    ||||||| |||| | ||||||| |||||||||||||||||||||||  |||||||    
T  11280342 caccaatagttagtaggttttgctatagctagcgttacctctactagacagtatc 11280396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 1345214 - 1345254
Alignment:
Q  192 ttacctctactattcagtatctgtaattatcgattatagtg 232  Q
    |||| ||||||||||||||| |||||| |||||||||||||    
T  1345214 ttacttctactattcagtatatgtaatcatcgattatagtg 1345254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 22827166 - 22827037
Alignment:
Q  79 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatgcaccaatggttaatgggttt 177  Q
    |||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||  |||||| ||  |||||| ||||||||| |||| |||||||    
T  22827166 atgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagttagtgggttt 22827067  T
Q  178 tgttatagctagcgttacctctactattca 207  Q
    ||||||||||||| |||| |||||||||||    
T  22827066 tgttatagctagcattacttctactattca 22827037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 22840959 - 22841088
Alignment:
Q  79 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 177  Q
    |||||||||||||||||||| ||||||||||||||||  || | |||| |||||||||  |||||| |||||||||| ||||||||| |||| |||||||    
T  22840959 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 22841058  T
Q  178 tgttatagctagcgttacctctactattca 207  Q
    |  |||||||||| |||| |||||||||||    
T  22841059 tactatagctagcattacttctactattca 22841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 24284782 - 24284954
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 146  Q
    |||||||||| ||||||||| | |||| |||| |||||||||| || |||| ||| ||||||||||| |||| || ||||||||||| |  |||||| ||    
T  24284782 ttgaaatatgccttgaattaatattgggaaaaagtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgtt 24284881  T
Q  147 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaatt 219  Q
    | |||||| ||||||||| || | ||| | ||  ||||||| |  ||| |||||||||| |||||||||||||    
T  24284882 aatatttcttgcaccaatagtcagtggatgttactatagctggtattagctctactatttagtatctgtaatt 24284954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 20261024 - 20260944
Alignment:
Q  138 ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 218  Q
    ||||||||||||||||| |||| |||| | |||||  ||||| |||| |||||||||||||||||||||||||| ||||||    
T  20261024 ttgtgtattagtatttcttgcatcaatagctaatgaattttgctataactagcgttacctctactattcagtatatgtaat 20260944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 24272707 - 24272846
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 146  Q
    ||||||||||||||||||||||||||||||||  || ||||||| | | || ||||||||||||||||| ||  | ||||| ||||| |  |||||| ||    
T  24272707 ttgaaatatgtcttgaattagtgttggaaaaa-atctcacatcgtagagtatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgtt 24272805  T
Q  147 agtatttcatgcaccaatggttaatgggttttgttatagct 187  Q
    |||||||| ||||||||| |||| || |||||  |||||||    
T  24272806 agtatttcttgcaccaatagttagtgagttttactatagct 24272846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 22826727 - 22826642
Alignment:
Q  123 catataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattca 207  Q
    ||||||||||||||  || ||| |||||||||| ||||||||| |||| ||| ||||| |||||||||| |||| |||||||||||    
T  22826727 catataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatagctagcattacttctactattca 22826642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 14721668 - 14721838
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 146  Q
    |||| ||||| | ||||||| |||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||||  |||| |||     
T  14721668 ttgacatatgccatgaattaatgttgggaaaatgtcccacatcggagaatagaaagaaatatgcaaagatttggcc-tataaataaaagccttgtttata 14721766  T
Q  147 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 218  Q
    |||||||| |||| |||| ||||||||||||||||||| ||    |||||| |||||||| |||||||||||    
T  14721767 agtatttcttgcagcaatagttaatgggttttgttatatctgatattacctatactattcggtatctgtaat 14721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 16910225 - 16910075
Alignment:
Q  89 tcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagct 187  Q
    |||||||||| |||| |||||||||||| || ||  ||||||||||||| |||||| |||||||||  ||| ||||| |||  || |||||| |||||||    
T  16910225 tcggataatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaatagtttgtgtgttttgctatagct 16910126  T
Q  188 agcgttacctctactattcagtatctgtaattatcgattatagtgaattctt 239  Q
    ||||| || | |||||||||||||||||||||||||||||||||||||||||    
T  16910125 agcgt-acatttactattcagtatctgtaattatcgattatagtgaattctt 16910075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 13558114 - 13557985
Alignment:
Q  79 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 177  Q
    |||||||||||||||||||| ||||||||||||||||  || | ||||||||||||||  |||||| |||||||||||||||||||| |||| ||| |||    
T  13558114 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagtggattt 13558015  T
Q  178 tgttatagctagcgttacctctactattca 207  Q
    || ||| |||||| |||| |||||||||||    
T  13558014 tgctattgctagcattacttctactattca 13557985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 220
Target Start/End: Complemental strand, 2921981 - 2921839
Alignment:
Q  79 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 177  Q
    ||||| |||||||||||||| |||||||||||||| || || |  |||||||||||||| || ||| |||||||||| ||||||||| |||| |||||||    
T  2921981 atgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttt 2921882  T
Q  178 tgttatagctagcgttacctctactattcagtatctgtaatta 220  Q
    || |||||||||| |||| |||| ||||||  || ||||||||    
T  2921881 tgctatagctagcattacgtctaatattcaaaatttgtaatta 2921839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 27340743 - 27340600
Alignment:
Q  78 aatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttt 177  Q
    ||||||||||||||||||||| ||||||||||||||||  || | |||||||||||||   ||||| ||||||| || || |||||| |||| |||||||    
T  27340743 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa-actgtgtgttagtatatcttgtaccaatagttagtgggttt 27340645  T
Q  178 tgttatagctagcgttacctctactattcagtatctgtaattatc 222  Q
    || |||| ||||| |||| |||||||||||  || ||||||||||    
T  27340644 tgctataactagcattacttctactattcaaaatttgtaattatc 27340600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 27401483 - 27401340
Alignment:
Q  78 aatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttt 177  Q
    ||||||||||||||||||||| ||||||||||||||||  || | |||||||||||||   ||||| ||||||| || || |||||| |||| |||||||    
T  27401483 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa-actgtgtgttagtatatcttgtaccaatagttagtgggttt 27401385  T
Q  178 tgttatagctagcgttacctctactattcagtatctgtaattatc 222  Q
    || |||| ||||| |||| |||||||||||  || ||||||||||    
T  27401384 tgctataactagcattacttctactattcaaaatttgtaattatc 27401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 13556119 - 13555994
Alignment:
Q  103 gaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctac 201  Q
    |||||||||||||  || | ||||||||||||||  |||||| |||||||||| ||||||||| |||| ||||||||| |||||||||| |||| |||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatagctagcattacttctac 13556020  T
Q  202 tattcagtatctgtaattatcgatta 227  Q
    ||||||  || |||||||||| ||||    
T  13556019 tattcaaaatttgtaattatcaatta 13555994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 11678827 - 11678966
Alignment:
Q  76 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 174  Q
    ||||||||||||||||||||||| ||||||||||||||||  || | ||| ||||||||| | |||||| ||||||||||   ||||||    || |||     
T  11678827 aaaatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaa----tagtgga 11678922  T
Q  175 ttttgttatagctagcgttacctctactattcagtatctgtaat 218  Q
    ||||| ||||| |||| |||||||||||||||||||| ||||||    
T  11678923 ttttgctatagttagcattacctctactattcagtatttgtaat 11678966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 2923295 - 2923168
Alignment:
Q  82 tcccacatcggataatacgaagaaatatgc-aaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttg 179  Q
    ||||||||||||||||| |||||||||||| ||||  || | ||||||||||||||| |||||| |||||| ||| ||||| ||| |||| ||||| |||    
T  2923295 tcccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaatagttagtgggtcttg 2923196  T
Q  180 ttatagctagcgttacctctactattca 207  Q
    |||||||||   |||| |||||||||||    
T  2923195 ttatagctaatattacttctactattca 2923168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 11677133 - 11677240
Alignment:
Q  100 gaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctc 198  Q
    ||||||||||||||||  ||   ||||||||||||| | |||||| ||||||||||   ||||||| ||||  |||||||  |||||||||| |||||||    
T  11677133 gaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaatagttagcgggttttcctatagctagcattacctc 11677232  T
Q  199 tactattc 206  Q
    ||||||||    
T  11677233 tactattc 11677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 184
Target Start/End: Complemental strand, 22880128 - 22880002
Alignment:
Q  59 cttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatg 157  Q
    ||||||||||||||||||||| ||| |||| | || ||||  |||||||||  ||| | || | |||||||||||| | ||||||| ||| |||||| ||    
T  22880128 cttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttg 22880029  T
Q  158 caccaatggttaatgggttttgttata 184  Q
    |||||||  ||| ||||||||| ||||    
T  22880028 caccaataattagtgggttttgctata 22880002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 184
Target Start/End: Complemental strand, 22898243 - 22898117
Alignment:
Q  59 cttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatg 157  Q
    ||||||||||||||||||||| ||| |||| | || ||||  |||||||||  ||| | || | |||||||||||| | ||| ||| ||| |||||| ||    
T  22898243 cttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttttgtgttaatatttcttg 22898144  T
Q  158 caccaatggttaatgggttttgttata 184  Q
    |||||||  ||| ||||||||| ||||    
T  22898143 caccaataattagtgggttttgctata 22898117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 211
Target Start/End: Original strand, 19670657 - 19670793
Alignment:
Q  76 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 174  Q
    |||||||| |||||  ||||||| ||||||||||||||||  || | ||||||||||||||  |||||| |||||||| | || |||||| |||| ||||    
T  19670657 aaaatgtctcacataagataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtggg 19670756  T
Q  175 ttttgttatagctagcgttacctctactattcagtat 211  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19670757 ttttgctatagctagcgttacctctactattcagtat 19670793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 32795672 - 32795543
Alignment:
Q  76 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 174  Q
    ||||||||||||||||||||||| ||||||||||||||||| || | ||||| ||||||||| ||| || | |||||| | || |||||| |||| ||||    
T  32795672 aaaatgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaatagttagtggg 32795573  T
Q  175 ttttgttatagctagcgttacctctactat 204  Q
    ||||| |||| ||| |||||||||||||||    
T  32795572 ttttgctataactaacgttacctctactat 32795543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 26896586 - 26896681
Alignment:
Q  95 aatacgaagaaatatgcaaagattttgccatataaataaa-agtttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctag 189  Q
    |||| ||||||||||||||||| || |||||||||||||| |  |||||| |||||||||| ||||  ||| ||||||| |||||| |||||||||    
T  26896586 aataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgcattaatagttaatgtgttttgctatagctag 26896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 32796436 - 32796359
Alignment:
Q  76 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatt 152  Q
    ||||||||||| ||||||||||| ||||||||||||||||  || | ||||||||||||||  |||||| ||||||||    
T  32796436 aaaatgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtatt 32796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 33897182 - 33897307
Alignment:
Q  61 tgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgca 159  Q
    |||||||||||||| ||||||||| | |||  |||||| ||||||||||| ||||||||  | |||||||||||||| |||||| |||||||||  | ||    
T  33897182 tgaattagtgttgggaaaatgtccaatatcatataataggaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttaca 33897281  T
Q  160 ccaatggttaatgggttttgttatag 185  Q
    |||||  ||| | |||||||||||||    
T  33897282 ccaataattagtaggttttgttatag 33897307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 42001905 - 42001987
Alignment:
Q  126 ataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattca 207  Q
    |||||||||||| |||||| |||||| | | ||||||||| |||| | ||||||| ||||| |||| |||| |||||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaatagttagtaggttttgctataggtagcattacttctactattca 42001987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 260530 - 260473
Alignment:
Q  48 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaa 105  Q
    ||||||||||| ||||||||||||||| ||||||||| |||| || ||||||||||||    
T  260530 ttgaaatatgttttgaattagtgttgggaaaatgtcctacatagggtaatacgaagaa 260473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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