View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8636_low_14 (Length: 202)
Name: NF8636_low_14
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8636_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 9013137 - 9013302
Alignment:
| Q |
16 |
aagaatagagttagccaacatgattcctggatgaagcagagtatcctttgttagtataagtgattttgtaacaacttccaagcaaacaaagagaccttca |
115 |
Q |
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| T |
9013137 |
aagaatagagttagccgacatgattcctcgacgaagcagagtatcctttgttagtataagtgattttgtaacaacttccaagcaaacaaagagaccttct |
9013236 |
T |
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| Q |
116 |
aataaaccattttattctaaacaaaactaaccacgtgttccataaaagacaacatatgatatacac |
181 |
Q |
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| T |
9013237 |
aataagccattttattctaaacaaaactaaccacgtgttccataaaagacaaaatatggtatacac |
9013302 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 23670827 - 23670768
Alignment:
| Q |
80 |
tttgtaacaacttccaagcaaacaaagagaccttcaaataaaccattttattctaaacaa |
139 |
Q |
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| T |
23670827 |
tttgtaacaaccgccaagcaaacaaagagaccttcaactaagccgctttattccaaacaa |
23670768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 24043103 - 24043044
Alignment:
| Q |
80 |
tttgtaacaacttccaagcaaacaaagagaccttcaaataaaccattttattctaaacaa |
139 |
Q |
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| T |
24043103 |
tttgtaacaaccgccaagcaaacaaagagaccttcaactaagccgctttattccaaacaa |
24043044 |
T |
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