View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8636_low_5 (Length: 400)

Name: NF8636_low_5
Description: NF8636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8636_low_5
NF8636_low_5
[»] scaffold0831 (1 HSPs)
scaffold0831 (295-400)||(5344-5451)
[»] chr1 (3 HSPs)
chr1 (334-383)||(17392134-17392183)
chr1 (60-105)||(19219192-19219237)
chr1 (60-105)||(19225449-19225494)
[»] chr8 (7 HSPs)
chr8 (46-102)||(13472934-13472990)
chr8 (52-105)||(27183901-27183954)
chr8 (60-105)||(27230297-27230342)
chr8 (51-102)||(12652276-12652327)
chr8 (218-333)||(27230073-27230187)
chr8 (58-102)||(13024778-13024822)
chr8 (58-102)||(18096714-18096758)
[»] chr2 (2 HSPs)
chr2 (46-105)||(13281083-13281142)
chr2 (51-100)||(7428992-7429041)
[»] chr5 (2 HSPs)
chr5 (50-92)||(42564990-42565032)
chr5 (51-103)||(42637358-42637410)
[»] chr3 (1 HSPs)
chr3 (60-102)||(2703738-2703780)


Alignment Details
Target: scaffold0831 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 5451 - 5344
Alignment:
Q  295 tggagaagtagacaattaattggtttttgtagtcaaagca---agttttattaaacaataggaagtagtacttgtttggtttccctggttttattttaat 391  Q
    ||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5451 tggagaagtagacaattaattggtttt-gtagtcaaagcataaagttttattaaacaataggaagtagtacttgtttggtttccctggttttattttaat 5353  T
Q  392 gcttattat 400  Q
    |||||||||    
T  5352 gcttattat 5344  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 383
Target Start/End: Original strand, 17392134 - 17392183
Alignment:
Q  334 aagttttattaaacaataggaagtagtacttgtttggtttccctggtttt 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17392134 aagttttattaaacaataggaagtagtacttgtttggtttccctggtttt 17392183  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 19219237 - 19219192
Alignment:
Q  60 ttttgggtgaaatcggtgtcaaggaatcatggactaaactcttcga 105  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  19219237 ttttgggtgaactcggtgtcaaggaatcatggactaagctcttcga 19219192  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 19225494 - 19225449
Alignment:
Q  60 ttttgggtgaaatcggtgtcaaggaatcatggactaaactcttcga 105  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  19225494 ttttgggtgagctcggtgtcaaggaatcatggactaagctcttcga 19225449  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 13472990 - 13472934
Alignment:
Q  46 tttcaacatatcggttttgggtgaaatcggtgtcaaggaatcatggactaaactctt 102  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||| ||||||    
T  13472990 tttcaacatatcaattttgggtgaaatcggtgtcaaagaatcatggactagactctt 13472934  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 27183901 - 27183954
Alignment:
Q  52 catatcggttttgggtgaaatcggtgtcaaggaatcatggactaaactcttcga 105  Q
    ||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||    
T  27183901 catatcgattttgggtgaaattggtgtcaaagaatcatggattaaactcttcga 27183954  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 27230342 - 27230297
Alignment:
Q  60 ttttgggtgaaatcggtgtcaaggaatcatggactaaactcttcga 105  Q
    |||||||||| || |||||||||||||||||||||| |||||||||    
T  27230342 ttttgggtgagattggtgtcaaggaatcatggactagactcttcga 27230297  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 12652276 - 12652327
Alignment:
Q  51 acatatcggttttgggtgaaatcggtgtcaaggaatcatggactaaactctt 102  Q
    |||||||| ||||||||||||| |||||  ||||||| ||||||||||||||    
T  12652276 acatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctt 12652327  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 27230187 - 27230073
Alignment:
Q  218 gtgattgaggagattgattttaaaggagacagtaagaattgtctaatcctaccttacaagaaaaactttggtacaattggagaagtagacaattaattgg 317  Q
    |||||||||||||| | ||||||| |||| | | | | ||||| |||  ||| ||||||||||||| ||||| ||||||||| | || ||| |||||| |    
T  27230187 gtgattgaggagatcggttttaaaagagaaattcatatttgtcaaatagtacattacaagaaaaaccttggtccaattggaggaataaacagttaatt-g 27230089  T
Q  318 tttttgtagtcaaagc 333  Q
     |||||||||||||||    
T  27230088 cttttgtagtcaaagc 27230073  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 13024822 - 13024778
Alignment:
Q  58 ggttttgggtgaaatcggtgtcaaggaatcatggactaaactctt 102  Q
    ||||||||||||| |||||||||| ||||| ||||||||| ||||    
T  13024822 ggttttgggtgaactcggtgtcaaagaatcgtggactaaattctt 13024778  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 18096714 - 18096758
Alignment:
Q  58 ggttttgggtgaaatcggtgtcaaggaatcatggactaaactctt 102  Q
    ||||||||||||| | |||||||||||||||||||| || |||||    
T  18096714 ggttttgggtgaagtgggtgtcaaggaatcatggaccaagctctt 18096758  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 13281083 - 13281142
Alignment:
Q  46 tttcaacatatcggttttgggtgaaatcggtgtcaaggaatcatggactaaactcttcga 105  Q
    ||||| ||||||  ||||||||||||| ||||| || ||||||||||||| |||||||||    
T  13281083 tttcagcatatcaattttgggtgaaattggtgttaaagaatcatggactagactcttcga 13281142  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 7429041 - 7428992
Alignment:
Q  51 acatatcggttttgggtgaaatcggtgtcaaggaatcatggactaaactc 100  Q
    ||||||| |||||||||||||||||||| |  | ||||||||||||||||    
T  7429041 acatatcagttttgggtgaaatcggtgtgagaggatcatggactaaactc 7428992  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 42565032 - 42564990
Alignment:
Q  50 aacatatcggttttgggtgaaatcggtgtcaaggaatcatgga 92  Q
    |||||||| |||||||||||| | |||||||||||||||||||    
T  42565032 aacatatcagttttgggtgaactaggtgtcaaggaatcatgga 42564990  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 42637410 - 42637358
Alignment:
Q  51 acatatcggttttgggtgaaatcggtgtcaaggaatcatggactaaactcttc 103  Q
    |||||||  ||||||||||| |||| || |||||||||||||| |||||||||    
T  42637410 acatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactcttc 42637358  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 2703738 - 2703780
Alignment:
Q  60 ttttgggtgaaatcggtgtcaaggaatcatggactaaactctt 102  Q
    ||||||||||| | ||||||||||||||||||| |||||||||    
T  2703738 ttttgggtgaacttggtgtcaaggaatcatggattaaactctt 2703780  T

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