View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8637_high_2 (Length: 761)
Name: NF8637_high_2
Description: NF8637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8637_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 20 - 710
Target Start/End: Original strand, 13536063 - 13536753
Alignment:
| Q |
20 |
gactatttcatattgattttcgtaacccaattcaagataacacaaagagggttgacccaatcactatcaccaataaataaatgagcttttgtcnnnnnnn |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13536063 |
gactatttcatattgattttcgtaacccaattcaagataacacaaagagggttgacccaatcacaatcaccaataaataaatgagcttttgtcaaaaaaa |
13536162 |
T |
|
| Q |
120 |
gacgacctaa---atgagctatttttcaacaaaataaagtgagatttacgaacaagccacaaggtatgtcctaccaaagttctataaataccattcctca |
216 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13536163 |
gacgacctgatcaatgagctatttttcaacaaaataaagtgagatttacgaacaagccacaaggtatgtcctaccaaagttctataaataccattcctca |
13536262 |
T |
|
| Q |
217 |
ccatgtcataaacccacatcacaagctaaattagttgtattcatattatacatttctctcttcattttcttcttgcatatttatcctttttagttatctt |
316 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||| |
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| T |
13536263 |
ccatctcataaacccacatcacaagcgaaattagttgtattcatattatacatttctcttttcattttcttcttgtatattgatcctttttaactatctt |
13536362 |
T |
|
| Q |
317 |
gatctatatatcatgggtgtttttactttcaatgatgaacatgtctcagctgtggctccagctaaactatacaaagctcttgcaaaagatgctgatgaaa |
416 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13536363 |
gat--atatatcatgggtgtttttactttcaacgatgaacatgtctcaaccgtggctccagctaaactctacaaagctcttgcaaaagatgctgatgaaa |
13536460 |
T |
|
| Q |
417 |
tcatcccaaaggtgattccagctgcccagaatgttgaaattgttgaaggaaatggaggacctggcaccatcaaaaagttatccatgtctgaaggtaattg |
516 |
Q |
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| T |
13536461 |
tagtcccaaaggtgatttctgctgcccaaagtgttgaaattgttgaaggaaatggtggacctggcaccatcaaaaagttatccatgtctgaaggtaattc |
13536560 |
T |
|
| Q |
517 |
attaagagcatttactatatccctgtcaaaaaatatacaactttattaattagtaattcaatagacatgttaagaaatcatatactcacttttatttttg |
616 |
Q |
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| T |
13536561 |
attaagagcatttactatatccctgtcaaaaaa-atacaactttattaattagtaattcaatagacatgttaagaaatcatatactcacttttatttttg |
13536659 |
T |
|
| Q |
617 |
aattagattttgagtgttcaaggagaccaatgataatacataaactgagtctatatacaaatactaagcttcaagaaacaactaatttccatgg |
710 |
Q |
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| T |
13536660 |
aattagattttgagtgttgaaggagaccaatgataatacataaactgagtctatatataaataataagcttcaagaaacaactaatttccatgg |
13536753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 184 - 515
Target Start/End: Original strand, 13529672 - 13530000
Alignment:
| Q |
184 |
gtcctaccaaagttctataaataccattcctcaccatgtcataaacccacatcacaagctaaattagttgtattcatattatacatttctctcttcattt |
283 |
Q |
| |
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||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||| | || ||||||| |
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| T |
13529672 |
gtcctaccaaagttctataaatatcatccctcactatgtcataaaccg-catcacaaactaaattagttgtattcatattatataccacttctttcattt |
13529770 |
T |
|
| Q |
284 |
tcttcttgcatatttatcctttttagttatcttgatctatatatcatgggtgtttttactttcaatgatgaacatgtctcagctgtggctccagctaaac |
383 |
Q |
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||||||| || || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
13529771 |
acttcttgaattttgatcctttttaattatcttgat--atatatcatgggtgtttttactttcaatgatgaacatgtctcaaccgtggctccagctaaac |
13529868 |
T |
|
| Q |
384 |
tatacaaagctcttgcaaaagatgctgatgaaatcatcccaaaggtgattccagctgcccagaatgttgaaattgttgaaggaaatggaggacctggcac |
483 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| | |||||||||||||||||||||||||||||| || || |
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| T |
13529869 |
tctacaaagctcttgcaaaagatgctgatgaaattgtcccaaaggtgatttctgctgcccaaagtgttgaaattgttgaaggaaatggaggaccaggaac |
13529968 |
T |
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| Q |
484 |
catcaaaaagttatccatgtctgaaggtaatt |
515 |
Q |
| |
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||| || ||||||||||| ||||||||||| |
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| T |
13529969 |
cattaagaagttatccattgttgaaggtaatt |
13530000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 175 - 523
Target Start/End: Original strand, 13541082 - 13541430
Alignment:
| Q |
175 |
acaaggtatgtcctaccaaagttctataaataccattcctcaccatgtcataaacccacatcacaagctaaattagttg---tattcatattatacatt- |
270 |
Q |
| |
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|||||||| ||||||||||||||||||||||| | ||||| ||| ||||||| |||||||| ||||| |||| | ||||||||||||||||| |
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| T |
13541082 |
acaaggtaggtcctaccaaagttctataaatagtaaccctcaatgtgttataaaccg-catcacaaactaaaatagtagcattattcatattatacatta |
13541180 |
T |
|
| Q |
271 |
---tctctcttcattttcttcttgcatatttatcctttttagttatcttgatctatatatcatgggtgtttttactttcaatgatgaacatgtctcagct |
367 |
Q |
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|||| ||||||| ||| ||||||||| |||||||||| ||||||| ||||||||||||| |||| ||||| |||||||||||||||| || |
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| T |
13541181 |
atttctcctttcatttacttattgcatattgatccttttta----tcttgat--atatatcatgggttcttttgttttcattgatgaacatgtctcaact |
13541274 |
T |
|
| Q |
368 |
gtggctccagctaaactatacaaagctcttgcaaaagatgctgatgaaatcatcccaaaggtgattccagctgcccagaatgttgaaattgttgaaggaa |
467 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
13541275 |
gtggctccagctaaactttacaaagcacttgcaaaagatgctgatgaaatcatcccaaaggtgattccagctgctcagagtgttgaaattgttgaaggaa |
13541374 |
T |
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| Q |
468 |
atggaggacctggcaccatcaaaaagttatccatgtctgaaggtaattgattaaga |
523 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
13541375 |
atggaggacctggcaccattaagaagttatccatgtctgaaggtaattgattaaga |
13541430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 175 - 515
Target Start/End: Original strand, 13553552 - 13553887
Alignment:
| Q |
175 |
acaaggtatgtcctaccaaagttctataaataccattcctcaccatgtcataaacccacatcacaagctaaat--tagttgtattcatattatacatttc |
272 |
Q |
| |
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|||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||| || || |||||||||| ||||||| | ||| |
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| T |
13553552 |
acaaggtaggtcctactcaagttctataaatagcatccctcaccatgtcataaaccg-catcacaagttatatactagttgtatttttattatatacttc |
13553650 |
T |
|
| Q |
273 |
tctcttcattttcttcttgcatatttatcctttttagttatcttgatctatatatcatgggtgtttttactttcaatgatgaacatgtctcagctgtggc |
372 |
Q |
| |
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|| ||||||||||||||||||||| ||| | |||| |||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
13553651 |
tcctttcattttcttcttgcatattaatcttcttta----tcttaat--atatatcatgggtgtttttactttcaatgatgaacatgtctcaaccgtggc |
13553744 |
T |
|
| Q |
373 |
tccagctaaactatacaaagctcttgcaaaagatgctgatgaaatcatcccaaaggtgattccagctgcccagaatgttgaaattgttgaaggaaatgga |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| | ||||||||||||||||||||||||| |
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| T |
13553745 |
tccagctaaactatacaaagctcttgcaaaagatgctgatgaaatcgtcccaaaggtgatttctgctgcccaaagtgttgaaattgttgaaggaaatgga |
13553844 |
T |
|
| Q |
473 |
ggacctggcaccatcaaaaagttatccatgtctgaaggtaatt |
515 |
Q |
| |
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||||| || ||||| || ||||||||||| ||||||||||| |
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|
| T |
13553845 |
ggaccaggaaccattaagaagttatccattgttgaaggtaatt |
13553887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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